Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8p15
         (704 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75536-2|CAA99830.2| 4171|Caenorhabditis elegans Hypothetical pr...    29   3.2  
AL117193-21|CAB60306.2|  318|Caenorhabditis elegans Hypothetical...    29   3.2  
Z30974-2|CAD82916.1|  478|Caenorhabditis elegans Hypothetical pr...    29   4.3  
Z30974-1|CAA83225.3|  566|Caenorhabditis elegans Hypothetical pr...    29   4.3  
AY090485-1|AAM11894.1|  566|Caenorhabditis elegans high-affinity...    29   4.3  

>Z75536-2|CAA99830.2| 4171|Caenorhabditis elegans Hypothetical protein
            F18C12.1 protein.
          Length = 4171

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 17/57 (29%), Positives = 29/57 (50%)
 Frame = +1

Query: 334  VIGQCVAIDTVNNIIYIGTNQGILSYDDAHSEINSERPIGDDDVRNIFIDNNDNQMY 504
            V+ Q +++    NI Y     GI+SY D  S+  ++  +  +D+R  F+   D Q Y
Sbjct: 2151 VVFQGMSVPDPKNICYDERIDGIMSYTDDVSQNVTKEEVEREDLRP-FVQTADTQRY 2206


>AL117193-21|CAB60306.2|  318|Caenorhabditis elegans Hypothetical
           protein Y105C5A.14 protein.
          Length = 318

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 7/61 (11%)
 Frame = +1

Query: 517 TNHEIFRFMNNTAAVK-RYDKVPKAYSFVLDSNGNIFYEFVDGRLYFL------SIDYYE 675
           T   +  F ++   +K R +++PKA+S    SNG   Y F     Y L      +I+YYE
Sbjct: 103 TKKNVLHFRDSAQFLKMRLEEMPKAFSLKAKSNGYFPYLFNHEDHYGLVLPHLPAIEYYE 162

Query: 676 P 678
           P
Sbjct: 163 P 163


>Z30974-2|CAD82916.1|  478|Caenorhabditis elegans Hypothetical
           protein K08E5.2b protein.
          Length = 478

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 18/47 (38%), Positives = 26/47 (55%)
 Frame = +1

Query: 67  IMIGIIIVTLLSSSIATNTLADKCETIKIGNEFYKRQLIATIDGYPT 207
           IM+G + VT L SS  +NT A     + IG     +QLI++   +PT
Sbjct: 75  IMLGFMTVTALLSSFISNT-ATTAMMVPIGQSVV-QQLISSFQHHPT 119


>Z30974-1|CAA83225.3|  566|Caenorhabditis elegans Hypothetical
           protein K08E5.2a protein.
          Length = 566

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 18/47 (38%), Positives = 26/47 (55%)
 Frame = +1

Query: 67  IMIGIIIVTLLSSSIATNTLADKCETIKIGNEFYKRQLIATIDGYPT 207
           IM+G + VT L SS  +NT A     + IG     +QLI++   +PT
Sbjct: 163 IMLGFMTVTALLSSFISNT-ATTAMMVPIGQSVV-QQLISSFQHHPT 207


>AY090485-1|AAM11894.1|  566|Caenorhabditis elegans high-affinity
           plasma membrane transporterINDY2 protein.
          Length = 566

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 18/47 (38%), Positives = 26/47 (55%)
 Frame = +1

Query: 67  IMIGIIIVTLLSSSIATNTLADKCETIKIGNEFYKRQLIATIDGYPT 207
           IM+G + VT L SS  +NT A     + IG     +QLI++   +PT
Sbjct: 163 IMLGFMTVTALLSSFISNT-ATTAMMVPIGQSVV-QQLISSFQHHPT 207


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,600,920
Number of Sequences: 27780
Number of extensions: 292538
Number of successful extensions: 730
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 692
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 730
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)