Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8p12
         (583 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalyt...    27   1.5  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   1.5  
SPAC222.07c |hri2||eIF2 alpha kinase Hri2|Schizosaccharomyces po...    27   2.6  
SPBC13G1.12 |did2||vacuolar sorting protein Did2|Schizosaccharom...    26   3.5  
SPCC553.02 |||glutamine-dependent NAD|Schizosaccharomyces pombe|...    26   3.5  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   4.6  
SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces pom...    25   6.1  
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    25   8.1  
SPAC4C5.04 |rad31|uba4|SUMO E1-like activator enzyme Rad31|Schiz...    25   8.1  

>SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalytic
           subunit Pka1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 512

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 16/37 (43%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
 Frame = +3

Query: 156 SEQRDPSQG-HQSRRADVRGELPREHPYRRGEIESHR 263
           S  R  SQ  HQ    D RGEL  EH  RR  ++  R
Sbjct: 129 SASRSSSQSSHQRHSRDGRGELGSEHGERRSAMDGLR 165


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 15/46 (32%), Positives = 20/46 (43%)
 Frame = -1

Query: 514 ASPCSVGSVMRP*LPL*CSVAAP*PPQDPTALPRPVSASQQALVPP 377
           ++P S+     P LP+    A P PP  P A P P        +PP
Sbjct: 426 SAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPP 471


>SPAC222.07c |hri2||eIF2 alpha kinase Hri2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 639

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
 Frame = +1

Query: 394 VERRIPDAGA-LWDLGAVRAPQQSTIAAVTASLPTPQSTVRQPNLQSLLSTNELSFELRK 570
           VE+ I ++   LW        + S +  +   L  P   V  PN+ +++STN L  E + 
Sbjct: 554 VEQHICESSLILWMTAKDPTKRPSLLEVLNCGLLLPNQ-VSMPNISNIVSTNHLDVETQM 612

Query: 571 ILI 579
            LI
Sbjct: 613 KLI 615


>SPBC13G1.12 |did2||vacuolar sorting protein
           Did2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 178

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 16/56 (28%), Positives = 26/56 (46%)
 Frame = +1

Query: 370 TTQEELMLVERRIPDAGALWDLGAVRAPQQSTIAAVTASLPTPQSTVRQPNLQSLL 537
           T QE++ L+ + + D   L           + ++   AS+PTP + V   NLQ  L
Sbjct: 122 TPQEDVDLLMQTVADEAGL----EFNQNMNNNLSVPAASVPTPAAPVEDDNLQERL 173


>SPCC553.02 |||glutamine-dependent NAD|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 700

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 9/20 (45%), Positives = 16/20 (80%)
 Frame = -3

Query: 347 RNSCRVFASSTRIILYRPKL 288
           R++CR+ A + +I+L RPK+
Sbjct: 96  RHNCRILALNGKILLIRPKI 115


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -1

Query: 457  VAAP*PPQDPTALPRPVSASQQALVPP 377
            ++AP PP  P ++P P SA      PP
Sbjct: 1702 MSAPTPPPPPMSVPPPPSAPPMPAGPP 1728


>SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 910

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -3

Query: 221 WKFATYVCPSGLMTLTRISLLRPVSGTSIARGSVSDL 111
           W+F T++C       TR+ L + VSG+  A   +  L
Sbjct: 611 WEFTTWLCKHDATEGTRVLLDKTVSGSISAEDVLEHL 647


>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 305

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = +3

Query: 411 GRGSAVGSWGGQGAATEHYSGSHG 482
           GRG A G  GG+G A     GS G
Sbjct: 39  GRGGARGGRGGRGGARGGRGGSSG 62


>SPAC4C5.04 |rad31|uba4|SUMO E1-like activator enzyme
           Rad31|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 307

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +1

Query: 379 EELMLVERRIPDAGALWDLGAVRAPQQSTIAAVTAS 486
           EE+ L +R+I     LW   A +A +QS +  +TAS
Sbjct: 9   EEIALYDRQI----RLWGFNAQQALKQSRVLLITAS 40


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,422,839
Number of Sequences: 5004
Number of extensions: 48516
Number of successful extensions: 142
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)