Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte8p12
(583 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0390 - 20280355-20281178,20281392-20281565,20281613-20281847 31 0.67
11_06_0134 + 20454405-20455121 31 0.89
08_02_0826 - 21583507-21583555,21584000-21584679 30 1.5
03_01_0317 + 2492030-2492591,2493189-2493249,2493951-2494066,249... 30 1.5
05_01_0538 + 4646772-4647059,4647462-4647542,4647819-4647890,464... 29 2.0
10_05_0049 + 8548732-8549433 29 3.6
10_07_0019 + 11931519-11932310 28 4.7
08_01_0539 + 4679392-4681282,4682060-4682104,4682403-4683560,468... 28 4.7
09_01_0005 - 193214-193228,193659-193776,193876-194072,194534-19... 27 8.2
08_02_0110 + 12650328-12650552,12650827-12651423,12651480-126518... 27 8.2
03_05_1104 + 30431833-30432143,30432789-30432862,30432949-304330... 27 8.2
03_05_0048 + 20258561-20259346 27 8.2
>06_03_0390 - 20280355-20281178,20281392-20281565,20281613-20281847
Length = 410
Score = 31.1 bits (67), Expect = 0.67
Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Frame = +1
Query: 394 VERRIP-DAGALWDLGAVRAPQQSTIAAVT 480
++RR+ D ALW+ R PQQ+ +AA+T
Sbjct: 64 LQRRLKIDGNALWNPAVFRTPQQNAVAAIT 93
>11_06_0134 + 20454405-20455121
Length = 238
Score = 30.7 bits (66), Expect = 0.89
Identities = 19/43 (44%), Positives = 21/43 (48%)
Frame = +3
Query: 354 FPRRNHYTGGTNAC*EADTGRGSAVGSWGGQGAATEHYSGSHG 482
F RR H +G A AD GRG + GG G AT SG G
Sbjct: 80 FCRRGHVSGDFPAKRRADRGRGGGCEAEGGDG-ATGWCSGEEG 121
>08_02_0826 - 21583507-21583555,21584000-21584679
Length = 242
Score = 29.9 bits (64), Expect = 1.5
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = +3
Query: 381 GTNAC*EADTGRGSAVGSWGGQGAATEHYSGSHGLITDPTEHGEAT*P 524
G+ A EA + GS G GG GA + Y+GS + HG+ + P
Sbjct: 184 GSYAGSEAGSYAGSGAGPHGGSGAGSGSYAGSRAGSYAGSGHGKGSTP 231
>03_01_0317 +
2492030-2492591,2493189-2493249,2493951-2494066,
2494662-2495176
Length = 417
Score = 29.9 bits (64), Expect = 1.5
Identities = 16/39 (41%), Positives = 20/39 (51%)
Frame = -1
Query: 460 SVAAP*PPQDPTALPRPVSASQQALVPPV**FLLGKASG 344
S + P PP P +P PV AS PP FLL ++G
Sbjct: 50 SSSPPPPPSPPHHVPLPVDASSAGPAPPSLAFLLTGSAG 88
>05_01_0538 +
4646772-4647059,4647462-4647542,4647819-4647890,
4648458-4649321
Length = 434
Score = 29.5 bits (63), Expect = 2.0
Identities = 25/68 (36%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Frame = +3
Query: 132 RDAGTRYR-SEQRDPSQGHQSRRADVRGELPREHPYRRGEIESHRSFLSRWRNQFGPIQN 308
RD R R S RD H S R D R + RE R HRS SR R++ ++
Sbjct: 311 RDYHRRDRDSRDRDYRSRHSSERQDDRRDRDREGSRHRRSSSRHRS-RSRSRSR-SRSRS 368
Query: 309 NSRTRRED 332
SR+R E+
Sbjct: 369 RSRSRNEE 376
>10_05_0049 + 8548732-8549433
Length = 233
Score = 28.7 bits (61), Expect = 3.6
Identities = 16/50 (32%), Positives = 20/50 (40%)
Frame = +3
Query: 360 RRNHYTGGTNAC*EADTGRGSAVGSWGGQGAATEHYSGSHGLITDPTEHG 509
RR +GG A GRG + GG GAA++ G HG
Sbjct: 122 RRERSSGGLRGKWRASRGRGGGCEAEGGGGAASQRTGKETGAAGGGRRHG 171
>10_07_0019 + 11931519-11932310
Length = 263
Score = 28.3 bits (60), Expect = 4.7
Identities = 18/43 (41%), Positives = 20/43 (46%)
Frame = +3
Query: 354 FPRRNHYTGGTNAC*EADTGRGSAVGSWGGQGAATEHYSGSHG 482
F RR +G A AD GRG + GG G AT SG G
Sbjct: 122 FCRRGRVSGDFPAKRRADRGRGGGCEAEGGDG-ATGRCSGEEG 163
>08_01_0539 +
4679392-4681282,4682060-4682104,4682403-4683560,
4683834-4684204,4684290-4684835,4684927-4685027,
4685117-4685933,4686025-4686213,4686313-4686384,
4686477-4686587,4686647-4686652,4686694-4686794,
4687714-4687813,4687891-4687986,4688157-4688273,
4688367-4688492,4688566-4688619,4688745-4688992,
4689087-4689195,4689284-4689583,4689799-4689963
Length = 2240
Score = 28.3 bits (60), Expect = 4.7
Identities = 20/68 (29%), Positives = 30/68 (44%)
Frame = +3
Query: 132 RDAGTRYRSEQRDPSQGHQSRRADVRGELPREHPYRRGEIESHRSFLSRWRNQFGPIQNN 311
RD GT+ +E D SR A + G +P E + IES + RW + G + N
Sbjct: 656 RDDGTKRSTEFPD------SRTAHIYGVVPAERDTYQPHIESSEWYSGRWSCKGGDWKRN 709
Query: 312 SRTRREDP 335
++ P
Sbjct: 710 DDFSQDKP 717
>09_01_0005 -
193214-193228,193659-193776,193876-194072,194534-195493
Length = 429
Score = 27.5 bits (58), Expect = 8.2
Identities = 13/31 (41%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
Frame = -3
Query: 512 LTVLCGVGNEAVTAAIVLCCGALT--APRSH 426
+T LCGVG A A + C G T P H
Sbjct: 378 ITELCGVGKYAADAYAIFCAGRATEVVPADH 408
>08_02_0110 +
12650328-12650552,12650827-12651423,12651480-12651857,
12651997-12652218,12652407-12652483,12652553-12652631,
12652920-12653105
Length = 587
Score = 27.5 bits (58), Expect = 8.2
Identities = 20/50 (40%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Frame = -1
Query: 517 VASP--CSVGSVMRP*LPL*CSVAAP*PPQDPTALPRPVSASQQALVPPV 374
VASP + S RP P+ S P PP +P P AS L PPV
Sbjct: 218 VASPRDSPIASPSRPEPPV-ASPPGPEPPVASPPVPEPQVASPPVLEPPV 266
>03_05_1104 +
30431833-30432143,30432789-30432862,30432949-30433067,
30434462-30434526,30434962-30435310
Length = 305
Score = 27.5 bits (58), Expect = 8.2
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -1
Query: 442 PPQDPTALPRPVSASQQALVPP 377
PP P LPRP ++S + PP
Sbjct: 41 PPPPPVRLPRPCASSHDPVPPP 62
>03_05_0048 + 20258561-20259346
Length = 261
Score = 27.5 bits (58), Expect = 8.2
Identities = 17/43 (39%), Positives = 21/43 (48%)
Frame = +3
Query: 354 FPRRNHYTGGTNAC*EADTGRGSAVGSWGGQGAATEHYSGSHG 482
F RR +G A +D GRG + + GG G AT SG G
Sbjct: 120 FCRRGRVSGDFPAKRRSDRGRGGSCEAEGGDG-ATGRRSGEEG 161
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,045,190
Number of Sequences: 37544
Number of extensions: 349001
Number of successful extensions: 1301
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1229
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1297
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1364465340
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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