Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte8p12
(583 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AK127638-1|BAC87066.1| 339|Homo sapiens protein ( Homo sapiens ... 31 3.9
Z69890-4|CAM26671.1| 371|Homo sapiens LUC7-like (S. cerevisiae)... 30 5.2
Z69890-1|CAM26669.1| 170|Homo sapiens LUC7-like (S. cerevisiae)... 30 5.2
M59911-1|AAA36120.1| 1051|Homo sapiens integrin alpha-3 chain pr... 30 5.2
D01038-1|BAA00845.1| 1019|Homo sapiens VLA-3 alpha subunit protein. 30 5.2
BC150190-1|AAI50191.1| 1051|Homo sapiens integrin, alpha 3 (anti... 30 5.2
BC065198-1|AAH65198.1| 354|Homo sapiens LUC7L protein protein. 30 5.2
AY005111-1|AAG22846.1| 371|Homo sapiens putative SR protein LUC... 30 5.2
AL831885-1|CAD38565.1| 79|Homo sapiens hypothetical protein pr... 30 5.2
AK223084-1|BAD96804.1| 371|Homo sapiens LUC7-like isoform b var... 30 5.2
AJ404326-2|CAB93982.1| 371|Homo sapiens SR+89 protein. 30 5.2
AB209658-1|BAD92895.1| 749|Homo sapiens integrin alpha 3 isofor... 30 5.2
>AK127638-1|BAC87066.1| 339|Homo sapiens protein ( Homo sapiens
cDNA FLJ45736 fis, clone JCMLC2002095, weakly similar
to P-selectin glycoprotein ligand 1 precursor. ).
Length = 339
Score = 30.7 bits (66), Expect = 3.9
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +3
Query: 366 NHYTGGTNAC*EADTGRGSAVGSWGGQGAATEHYSGSHG 482
NH GGT+ C + G + S GG T+H +GSHG
Sbjct: 210 NHSHGGTDHCTRSHGGTDHSTHSHGG----TDHSTGSHG 244
>Z69890-4|CAM26671.1| 371|Homo sapiens LUC7-like (S. cerevisiae)
protein.
Length = 371
Score = 30.3 bits (65), Expect = 5.2
Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Frame = +3
Query: 129 SRDAGTRYRSEQRDPSQGHQ--SRRADVRGELPREHPYRRGEIESHRS 266
SRD R+RS R S+GH+ SR + + RE R ES RS
Sbjct: 295 SRDRHRRHRSRSRSHSRGHRRASRDRSAKYKFSRERASREESWESGRS 342
>Z69890-1|CAM26669.1| 170|Homo sapiens LUC7-like (S. cerevisiae)
protein.
Length = 170
Score = 30.3 bits (65), Expect = 5.2
Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Frame = +3
Query: 129 SRDAGTRYRSEQRDPSQGHQ--SRRADVRGELPREHPYRRGEIESHRS 266
SRD R+RS R S+GH+ SR + + RE R ES RS
Sbjct: 94 SRDRHRRHRSRSRSHSRGHRRASRDRSAKYKFSRERASREESWESGRS 141
>M59911-1|AAA36120.1| 1051|Homo sapiens integrin alpha-3 chain
protein.
Length = 1051
Score = 30.3 bits (65), Expect = 5.2
Identities = 14/26 (53%), Positives = 17/26 (65%)
Frame = -2
Query: 468 YSALLRRPDRPKIPQRSRVRYPPLNK 391
YS LR PDRP++ RS YP LN+
Sbjct: 574 YSLPLRMPDRPRLGLRSLDAYPILNQ 599
>D01038-1|BAA00845.1| 1019|Homo sapiens VLA-3 alpha subunit protein.
Length = 1019
Score = 30.3 bits (65), Expect = 5.2
Identities = 14/26 (53%), Positives = 17/26 (65%)
Frame = -2
Query: 468 YSALLRRPDRPKIPQRSRVRYPPLNK 391
YS LR PDRP++ RS YP LN+
Sbjct: 542 YSLPLRMPDRPRLGLRSLDAYPILNQ 567
>BC150190-1|AAI50191.1| 1051|Homo sapiens integrin, alpha 3 (antigen
CD49C, alpha 3 subunit of VLA-3 receptor) protein.
Length = 1051
Score = 30.3 bits (65), Expect = 5.2
Identities = 14/26 (53%), Positives = 17/26 (65%)
Frame = -2
Query: 468 YSALLRRPDRPKIPQRSRVRYPPLNK 391
YS LR PDRP++ RS YP LN+
Sbjct: 574 YSLPLRMPDRPRLGLRSLDAYPILNQ 599
>BC065198-1|AAH65198.1| 354|Homo sapiens LUC7L protein protein.
Length = 354
Score = 30.3 bits (65), Expect = 5.2
Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Frame = +3
Query: 129 SRDAGTRYRSEQRDPSQGHQ--SRRADVRGELPREHPYRRGEIESHRS 266
SRD R+RS R S+GH+ SR + + RE R ES RS
Sbjct: 278 SRDRHRRHRSRSRSHSRGHRRASRDRSAKYKFSRERASREESWESGRS 325
>AY005111-1|AAG22846.1| 371|Homo sapiens putative SR protein LUC7B1
protein.
Length = 371
Score = 30.3 bits (65), Expect = 5.2
Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Frame = +3
Query: 129 SRDAGTRYRSEQRDPSQGHQ--SRRADVRGELPREHPYRRGEIESHRS 266
SRD R+RS R S+GH+ SR + + RE R ES RS
Sbjct: 295 SRDRHRRHRSRSRSHSRGHRRASRDRSAKYKFSRERASREESWESGRS 342
>AL831885-1|CAD38565.1| 79|Homo sapiens hypothetical protein
protein.
Length = 79
Score = 30.3 bits (65), Expect = 5.2
Identities = 15/51 (29%), Positives = 24/51 (47%)
Frame = +1
Query: 151 TGLSNEILVKVISPEGQTYVANFQENTLIEEVKLKAIGHFYPDGETSLGRY 303
T S+ L +V+ PEG+ Q + + L A+GH G+ L R+
Sbjct: 23 TRASHVCLSQVVHPEGEVETGGEQRRWPLTRIPLGALGHSLGRGQEKLNRF 73
>AK223084-1|BAD96804.1| 371|Homo sapiens LUC7-like isoform b
variant protein.
Length = 371
Score = 30.3 bits (65), Expect = 5.2
Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Frame = +3
Query: 129 SRDAGTRYRSEQRDPSQGHQ--SRRADVRGELPREHPYRRGEIESHRS 266
SRD R+RS R S+GH+ SR + + RE R ES RS
Sbjct: 295 SRDRHRRHRSRSRSHSRGHRRASRDRSAKYKFSRERASREESWESGRS 342
>AJ404326-2|CAB93982.1| 371|Homo sapiens SR+89 protein.
Length = 371
Score = 30.3 bits (65), Expect = 5.2
Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Frame = +3
Query: 129 SRDAGTRYRSEQRDPSQGHQ--SRRADVRGELPREHPYRRGEIESHRS 266
SRD R+RS R S+GH+ SR + + RE R ES RS
Sbjct: 295 SRDRHRRHRSRSRSHSRGHRRASRDRSAKYKFSRERASREESWESGRS 342
>AB209658-1|BAD92895.1| 749|Homo sapiens integrin alpha 3 isoform
b, precursor variant protein.
Length = 749
Score = 30.3 bits (65), Expect = 5.2
Identities = 14/26 (53%), Positives = 17/26 (65%)
Frame = -2
Query: 468 YSALLRRPDRPKIPQRSRVRYPPLNK 391
YS LR PDRP++ RS YP LN+
Sbjct: 628 YSLPLRMPDRPRLGLRSLDAYPILNQ 653
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 84,212,450
Number of Sequences: 237096
Number of extensions: 1787982
Number of successful extensions: 5609
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 5215
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5603
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 6042162242
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -