Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8p12
         (583 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    25   0.54 
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    24   1.3  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    22   3.8  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            22   5.1  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    21   8.9  

>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 25.0 bits (52), Expect = 0.54
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = +2

Query: 5   SKSKCCYTNTHIVFKIYSFRACGCS*GYPH 94
           SK    +T TH   K Y+   CG S GY H
Sbjct: 216 SKQLKVHTRTHTGEKPYTCDICGKSFGYNH 245


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +3

Query: 126 SSRDAGTRYRSEQRDPSQGHQSRRADVRGEL 218
           SS D   +Y+++  +    HQ  R  +RG L
Sbjct: 107 SSNDPKNQYKNQNNNHYTSHQHLRTHLRGTL 137


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 9/32 (28%), Positives = 15/32 (46%)
 Frame = -3

Query: 230 VFSWKFATYVCPSGLMTLTRISLLRPVSGTSI 135
           ++SWK   +  P+G   L  I     + G S+
Sbjct: 27  IYSWKALEFAFPNGYAKLAAIKSGSYIPGASL 58


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = -3

Query: 119 SDLLISYYRVDNLRNTH 69
           SDL   Y RV NL  TH
Sbjct: 215 SDLRTIYSRVRNLNRTH 231


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = +3

Query: 363 RNHYTGGTN 389
           RNH +GGTN
Sbjct: 260 RNHLSGGTN 268


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,851
Number of Sequences: 438
Number of extensions: 3725
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16870914
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)