Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8p11
         (283 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   1.9  
AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory recept...    20   4.4  
U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.    20   5.8  
AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain tran...    20   5.8  
AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.           20   5.8  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.4 bits (43), Expect = 1.9
 Identities = 9/48 (18%), Positives = 23/48 (47%)
 Frame = +2

Query: 38   YRESVCSSRLFSNSWSFIHGSLEF*NWKDKTLSANDESENSCTRAYHC 181
            + E+   +++ + S + +HG  ++ N+  + L+     +   T   HC
Sbjct: 1147 FDENTKDTKITAASETILHGLKKYTNYSMEVLAYTSGGDGVRTTPIHC 1194


>AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory receptor
           candidate 53 protein.
          Length = 659

 Score = 20.2 bits (40), Expect = 4.4
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = -3

Query: 170 PLCKNSHSHHLL 135
           PLCK+   HH L
Sbjct: 211 PLCKSCDLHHRL 222


>U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.
          Length = 322

 Score = 19.8 bits (39), Expect = 5.8
 Identities = 8/28 (28%), Positives = 14/28 (50%)
 Frame = -3

Query: 221 RFSCGDYYTNN*SSNGKPLCKNSHSHHL 138
           RFS    Y N+  ++  P+  +  + HL
Sbjct: 59  RFSINQPYLNHFDNSVTPMVNHDFTQHL 86


>AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain
           transcription factor Fushitarazu protein.
          Length = 290

 Score = 19.8 bits (39), Expect = 5.8
 Identities = 8/28 (28%), Positives = 14/28 (50%)
 Frame = -3

Query: 221 RFSCGDYYTNN*SSNGKPLCKNSHSHHL 138
           RFS    Y N+  ++  P+  +  + HL
Sbjct: 59  RFSINQPYLNHFDNSVTPMVNHDFTQHL 86


>AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.
          Length = 290

 Score = 19.8 bits (39), Expect = 5.8
 Identities = 8/28 (28%), Positives = 14/28 (50%)
 Frame = -3

Query: 221 RFSCGDYYTNN*SSNGKPLCKNSHSHHL 138
           RFS    Y N+  ++  P+  +  + HL
Sbjct: 59  RFSINQPYLNHFDNSVTPMVNHDFTQHL 86


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 54,931
Number of Sequences: 336
Number of extensions: 960
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 48
effective length of database: 106,457
effective search space used:  4790565
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)