Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8p11
         (283 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25B8.07c |||hypoxia induced family protein|Schizosaccharomyc...    54   5e-09
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    24   3.6  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    24   4.7  
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    23   6.3  
SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inosito...    23   8.3  
SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharom...    23   8.3  

>SPAC25B8.07c |||hypoxia induced family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 113

 Score = 53.6 bits (123), Expect = 5e-09
 Identities = 24/62 (38%), Positives = 34/62 (54%)
 Frame = +3

Query: 18  EKFHRKFTENPFVPLGCLATAGALSMGLWSFRTGKTRLSQQMMRVRILAQGLTIAALVIG 197
           EK    F  NPF+PLGCL T G      +  R     ++ + MR R+++QG T+AAL   
Sbjct: 29  EKLKYVFVRNPFIPLGCLMTVGTFLASGYYIRRENHLMANKFMRYRVMSQGFTLAALAFS 88

Query: 198 VV 203
           V+
Sbjct: 89  VL 90


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 24.2 bits (50), Expect = 3.6
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -3

Query: 197 TNN*SSNGKPLCKNSHSHHLLRESCLSSSKT 105
           T++ SS+ +P   +SHS  L      SSSK+
Sbjct: 384 TSSSSSSSRPASSSSHSSSLSSHKSSSSSKS 414


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 23.8 bits (49), Expect = 4.7
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -3

Query: 158 NSHSHHLLRESCLSSSKTPK 99
           NSH+ H L+ S L   KTP+
Sbjct: 78  NSHNKHALQNSQLPLPKTPE 97


>SPBP19A11.04c |mor2|cps12|morphogenesis protein
            Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 23.4 bits (48), Expect = 6.3
 Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = -1

Query: 241  IIEYYFEDFPVVITTPITKAAMVS-PCARILTLIIC*ESLVFPVLKLQRPM 92
            +  YYFED+ + I + +T     +    R  TL +  E  +FP++  Q+P+
Sbjct: 1820 LYSYYFEDYELEIVSTLTMFLSNNLTWFRKSTLDVLKE--LFPLIDFQKPI 1868


>SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inositol
           pyrophosphate synthase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 920

 Score = 23.0 bits (47), Expect = 8.3
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +3

Query: 9   TTREKFHRKFTENPFVPL 62
           T ++KF   FT +PFV L
Sbjct: 401 TPKQKFKFSFTSDPFVKL 418


>SPBC16C6.06 |pep1|vps10|sorting receptor for
           CPY|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1466

 Score = 23.0 bits (47), Expect = 8.3
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = +2

Query: 41  RESVCSSRLFSNSWSFIHGSLEF*NWKDKTLSANDESENSCTR 169
           R+ V  S  F ++WS +  +LE+ +W        D++   C R
Sbjct: 832 RDVVFVSLDFGDTWSRLPSNLEYCSWAKAEKLVVDDTLIFCIR 874


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 977,062
Number of Sequences: 5004
Number of extensions: 16007
Number of successful extensions: 33
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 63619130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)