Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte8p11
(283 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_03_0124 + 12526572-12526689,12528205-12528392 67 2e-12
07_01_0129 - 959600-959625,960100-961428,961585-961657,962185-96... 27 1.7
01_05_0127 - 18401461-18401464,18401868-18403876,18404060-184042... 26 5.2
12_02_0134 - 14071190-14071435,14071800-14071988,14072114-140721... 25 6.8
05_01_0400 - 3159370-3159385,3159599-3159703,3159972-3160006,316... 25 6.8
11_01_0525 + 4132525-4132845,4133024-4133302 25 9.0
09_06_0260 - 21911358-21911438,21911715-21911828,21911911-219120... 25 9.0
05_01_0604 + 5405947-5406687 25 9.0
04_03_0221 + 12890347-12890432,12890712-12890844,12891581-128916... 25 9.0
03_05_0418 - 24055192-24056622 25 9.0
03_01_0063 + 502441-502657,502765-503027,503115-503528 25 9.0
>09_03_0124 + 12526572-12526689,12528205-12528392
Length = 101
Score = 66.9 bits (156), Expect = 2e-12
Identities = 33/66 (50%), Positives = 45/66 (68%)
Frame = +3
Query: 30 RKFTENPFVPLGCLATAGALSMGLWSFRTGKTRLSQQMMRVRILAQGLTIAALVIGVVIT 209
+K +NPFVP+G L TAG L+ GL SFR G ++L Q++MR R++AQG T+ AL+IG
Sbjct: 29 KKPVKNPFVPIGALVTAGVLTAGLISFRYGNSKLGQKLMRARVVAQGATV-ALMIGSAYY 87
Query: 210 TGKSSK 227
G K
Sbjct: 88 YGDQIK 93
>07_01_0129 -
959600-959625,960100-961428,961585-961657,962185-962226
Length = 489
Score = 27.5 bits (58), Expect = 1.7
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = -3
Query: 182 SNGKPLCKNSHSHHLLRESCLSSSKTPKTH 93
+N LC+ +S HLL ++CL S + + H
Sbjct: 178 NNCPRLCRQPYSMHLLLDNCLFSRQLEREH 207
>01_05_0127 -
18401461-18401464,18401868-18403876,18404060-18404237,
18404381-18404958,18405609-18405611
Length = 923
Score = 25.8 bits (54), Expect = 5.2
Identities = 16/52 (30%), Positives = 24/52 (46%)
Frame = -1
Query: 229 YFEDFPVVITTPITKAAMVSPCARILTLIIC*ESLVFPVLKLQRPMDKAPAV 74
+ +D P++ I + AM +P + L C P + RP DK PAV
Sbjct: 830 HLQDLPML--QDICERAMSAPMLETIKLRGCWGIKRLPAIHAGRPRDKPPAV 879
>12_02_0134 -
14071190-14071435,14071800-14071988,14072114-14072194,
14072261-14072404,14072528-14072761,14072836-14073981,
14074863-14074922,14075178-14075420,14075509-14075607,
14076196-14076367,14076597-14076735,14077514-14077624,
14077695-14077797,14077885-14077962,14078054-14078122,
14078203-14078275,14078891-14078975,14079473-14079536,
14079963-14080073,14080139-14080213,14080306-14080398,
14080982-14081056,14081172-14081261
Length = 1259
Score = 25.4 bits (53), Expect = 6.8
Identities = 10/32 (31%), Positives = 14/32 (43%)
Frame = -3
Query: 212 CGDYYTNN*SSNGKPLCKNSHSHHLLRESCLS 117
CG Y N C+ S+ H L+ CL+
Sbjct: 628 CGSYLNKESKQNSNQKCRLSNPHALVVHCCLA 659
>05_01_0400 -
3159370-3159385,3159599-3159703,3159972-3160006,
3160134-3160272,3160457-3160605,3161052-3161173,
3161296-3161417,3161779-3162033,3162108-3162271,
3162311-3162489,3162593-3162767,3162916-3163002,
3163144-3163446,3163539-3163594,3163813-3163894,
3163972-3164039,3164779-3164835,3164926-3164991,
3165121-3165192,3167363-3167459
Length = 782
Score = 25.4 bits (53), Expect = 6.8
Identities = 10/52 (19%), Positives = 24/52 (46%)
Frame = +2
Query: 41 RESVCSSRLFSNSWSFIHGSLEF*NWKDKTLSANDESENSCTRAYHCCFSYW 196
R + ++ + S + G +++ +KD L + + ++C A + YW
Sbjct: 362 RNGKMTKEIYEKTLSLLTGVVDYERFKDVDLVIEESNTSNCYLAIYFIEQYW 413
>11_01_0525 + 4132525-4132845,4133024-4133302
Length = 199
Score = 25.0 bits (52), Expect = 9.0
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = +3
Query: 57 PLGCLATAGALSMGLWSF-RTGKTRLSQQM 143
P GCL+T G ++ L F RTGK +Q+
Sbjct: 33 PTGCLSTTGYKNLQLKFFQRTGKKHDQKQL 62
>09_06_0260 -
21911358-21911438,21911715-21911828,21911911-21912033,
21912342-21912419,21912498-21912647,21913505-21913601,
21913679-21913860,21913899-21913982,21914243-21914303,
21914414-21914506,21914588-21914782,21914937-21915006,
21915536-21915572,21915654-21915737,21915828-21915885,
21916008-21916084,21916185-21916244,21916325-21916687
Length = 668
Score = 25.0 bits (52), Expect = 9.0
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = -1
Query: 190 TKAAMVSPCARILTLIIC*ESLVFPVLKLQRPMDKAPAVAKQ 65
T A++ C + L++ S+ P ++ Q P +APA AK+
Sbjct: 51 TSLAVLVGCG--VALLVRRSSISAPAVRAQEPQPRAPAPAKR 90
>05_01_0604 + 5405947-5406687
Length = 246
Score = 25.0 bits (52), Expect = 9.0
Identities = 13/43 (30%), Positives = 18/43 (41%)
Frame = -3
Query: 152 HSHHLLRESCLSSSKTPKTHGXXXXXXXXT*RNKRILCKFSMK 24
H HLLR + + T K G R R++ K+S K
Sbjct: 104 HRRHLLRSANTTEGNTSKIEGKKSSHNRGEKRLNRVMNKYSKK 146
>04_03_0221 +
12890347-12890432,12890712-12890844,12891581-12891607,
12892285-12892650
Length = 203
Score = 25.0 bits (52), Expect = 9.0
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = +2
Query: 128 TLSANDESENSCTRAYHCCFSYWCSNHH 211
T++A DE E + C F WC ++H
Sbjct: 126 TVAATDEVERLRQKFSCCSFIAWCLDNH 153
>03_05_0418 - 24055192-24056622
Length = 476
Score = 25.0 bits (52), Expect = 9.0
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = +3
Query: 60 LGCLATAGALSMGLW 104
LGC A+ GAL G W
Sbjct: 226 LGCCASLGALEQGAW 240
>03_01_0063 + 502441-502657,502765-503027,503115-503528
Length = 297
Score = 25.0 bits (52), Expect = 9.0
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -3
Query: 185 SSNGKPLCKNSHSHHLLRESCLSS 114
+SNG+PL +S H L ES +SS
Sbjct: 183 NSNGQPLATSSPPAHHLVESLISS 206
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,738,655
Number of Sequences: 37544
Number of extensions: 90473
Number of successful extensions: 232
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 230
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 232
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 279801164
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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