Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8p03
         (645 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC8D2.10c |rmt3|rmt3|type I ribosomal protein arginine N-methy...    28   1.0  
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce...    28   1.0  
SPAC25G10.08 |||translation initiation factor eIF3b |Schizosacch...    25   7.1  
SPCC63.10c |||dolichol kinase |Schizosaccharomyces pombe|chr 3||...    25   7.1  

>SPBC8D2.10c |rmt3|rmt3|type I ribosomal protein arginine
           N-methytransferase Rmt3|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 543

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
 Frame = +3

Query: 204 KKRRKQTTSDSEDELPLTKLCSDANSY--KSLTRNSIEVCEFCDKVFKNRYKSIIHTMTH 377
           K +  + TS + D+L +T   +D +SY  +S   N I      D V    Y+  ++   H
Sbjct: 193 KDKMNELTSQTTDQLSVTPKKADNDSYYFESYAGNDIHFLMLNDSVRTEGYRDFVYHNKH 252

Query: 378 I 380
           I
Sbjct: 253 I 253


>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 428

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 17/57 (29%), Positives = 27/57 (47%)
 Frame = +3

Query: 315 CEFCDKVFKNRYKSIIHTMTHITIPLIKDSLKQCLSCKLYFPSQDDLKCHVAKKHIK 485
           C FC +VF  +   + H  +H      + S     SCK  F  +D+L  HV + H++
Sbjct: 6   CPFCKRVFHRQEHQVRHIRSHTGEKPFECSYP---SCKKRFTRRDELIRHV-RTHLR 58


>SPAC25G10.08 |||translation initiation factor eIF3b
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 725

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +3

Query: 423 CKLYFPSQDDLKCHVAKKHIKIDYTSFN 506
           CKLY+ S  D  C    +H K   ++F+
Sbjct: 409 CKLYWQSNGDYLCVKVDRHTKTKKSTFS 436


>SPCC63.10c |||dolichol kinase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 465

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 13/44 (29%), Positives = 25/44 (56%)
 Frame = -3

Query: 400 SFISGIVMCVMVWIMLLYLFLNTLSQNSQTSILFLVKLLYEFAS 269
           S +SG+++  +  ++LL L +  L+     S LF   L+Y F++
Sbjct: 148 SVLSGVLLISLPTLILLNLCILKLAAKLHLSALFTTCLIYFFSA 191


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,381,873
Number of Sequences: 5004
Number of extensions: 46511
Number of successful extensions: 131
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)