Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8p03
         (645 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0934 - 7212408-7212794,7212887-7213416,7214192-7214302,721...    28   5.5  
06_01_1106 + 9111560-9112942                                           28   7.3  
09_06_0317 - 22265786-22267618,22267874-22268446,22268546-222686...    27   9.7  
06_01_0039 - 386576-387098,387173-387468,387744-388067,388165-38...    27   9.7  

>06_01_0934 -
           7212408-7212794,7212887-7213416,7214192-7214302,
           7214322-7214811
          Length = 505

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 9/26 (34%), Positives = 19/26 (73%)
 Frame = +3

Query: 288 SLTRNSIEVCEFCDKVFKNRYKSIIH 365
           S+TR  +E+C  CD++  N+ ++++H
Sbjct: 268 SVTRMLMEMCLNCDELLDNKQRNVLH 293


>06_01_1106 + 9111560-9112942
          Length = 460

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +3

Query: 513 KTPLPQSQAMRLESNVKLEPFCFDNKESNGDVKL 614
           K  +  S+ + + S V+LEP CFD       VKL
Sbjct: 198 KASMDSSEGIIVNSFVELEPLCFDGWSRMSPVKL 231


>09_06_0317 -
           22265786-22267618,22267874-22268446,22268546-22268677,
           22268931-22269137,22269287-22269388,22270742-22271032
          Length = 1045

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +3

Query: 375 HITIPLIKDSLKQCLSCKLYFPSQDDLKCHVA 470
           H+   L  D   QC +C L F  +++L  H A
Sbjct: 883 HVISTLFDDQSHQCNTCGLRFSLEEELSVHTA 914


>06_01_0039 -
           386576-387098,387173-387468,387744-388067,388165-388276,
           388355-388482,388914-389048,389122-389250,389620-389787,
           389897-390019,390099-390227,390543-390866,390946-392901
          Length = 1448

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +3

Query: 438 PSQDDLKCHVAKKHIKIDYTSFNGGKTP 521
           PS D    HVA + +   Y+SFNG   P
Sbjct: 528 PSTDSQANHVAYQQLPSHYSSFNGAAKP 555


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,926,607
Number of Sequences: 37544
Number of extensions: 250849
Number of successful extensions: 622
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 609
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 621
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)