Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8p03
         (645 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    24   1.4  
L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein pro...    23   2.5  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    23   3.3  
AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    22   5.8  
AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc fi...    21   7.7  

>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 15/62 (24%), Positives = 24/62 (38%)
 Frame = +3

Query: 282 YKSLTRNSIEVCEFCDKVFKNRYKSIIHTMTHITIPLIKDSLKQCLSCKLYFPSQDDLKC 461
           Y++ T      CE+C K F  +    +H   H      K+   +C  C+  F     L  
Sbjct: 111 YRTHTGEKPYQCEYCSKSFSVKENLSVHRRIH-----TKERPYKCDVCERAFEHSGKLHR 165

Query: 462 HV 467
           H+
Sbjct: 166 HM 167



 Score = 23.8 bits (49), Expect = 1.4
 Identities = 18/68 (26%), Positives = 24/68 (35%)
 Frame = +3

Query: 315 CEFCDKVFKNRYKSIIHTMTHITIPLIKDSLKQCLSCKLYFPSQDDLKCHVAKKHIKIDY 494
           C  C K F    + +IH  TH       +    C +C   F     LK H      +  Y
Sbjct: 178 CTVCSKTFIQSGQLVIHMRTH-----TGEKPYVCKACGKGFTCSKQLKVHTRTHTGEKPY 232

Query: 495 TSFNGGKT 518
           T    GK+
Sbjct: 233 TCDICGKS 240



 Score = 22.2 bits (45), Expect = 4.4
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +3

Query: 312 VCEFCDKVFKNRYKSIIHTMTH 377
           VC+ C K F    +  +HT TH
Sbjct: 205 VCKACGKGFTCSKQLKVHTRTH 226


>L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein
           protein.
          Length = 81

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +3

Query: 315 CEFCDKVFKNRYKSIIHTMTHITIP 389
           C++C+KV+ +     +H  TH T+P
Sbjct: 19  CKYCEKVYVSLGALKMHIRTH-TLP 42


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -2

Query: 497 SIVNFDMFLRHVTFQII 447
           +++N D+ L HV FQI+
Sbjct: 385 NVLNNDLNLEHVNFQIL 401


>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
           finger domain-Z3 isoform protein.
          Length = 92

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 6/22 (27%), Positives = 14/22 (63%)
 Frame = +3

Query: 300 NSIEVCEFCDKVFKNRYKSIIH 365
           +++ VCEFC++ ++ +     H
Sbjct: 33  DTLYVCEFCNRRYRTKNSLTTH 54


>AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc
           finger domain-Z2 isoform protein.
          Length = 71

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = +3

Query: 414 CLSCKLYFPSQDDLKCHVAKKH 479
           C  C     S+  LK HVA KH
Sbjct: 8   CQLCGKVLCSKASLKRHVADKH 29


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,649
Number of Sequences: 438
Number of extensions: 3338
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19438227
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)