Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8o24
         (620 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0927 + 33082645-33083286                                         67   9e-12
06_01_0198 + 1529190-1530371                                           28   5.2  
05_01_0210 + 1583176-1584177                                           28   5.2  
06_01_0044 + 415462-416058                                             27   9.1  

>01_06_0927 + 33082645-33083286
          Length = 213

 Score = 67.3 bits (157), Expect = 9e-12
 Identities = 48/145 (33%), Positives = 66/145 (45%), Gaps = 12/145 (8%)
 Frame = +1

Query: 220 LEKAYMRDCVRAQEYTAACSRLLVQYKVAFKQVQADEFPNIEAFVAKYRLDCPAALER-I 396
           LE+AY+RD V A +Y A C +L+ Q+      +       I  FV  YRLDCPAAL R +
Sbjct: 31  LERAYVRDLVSAADYEAECLKLISQFNSLSSSLAG--VVTIPRFVEAYRLDCPAALNRLV 88

Query: 397 RENKPNLIK----------DDKGNTNKYIAEIVSLFITLMDKLRLEFRAMDMIQPEXXXX 546
           +   P  ++               +   IA+ V  FIT MD ++L   A D ++P     
Sbjct: 89  QSGVPATVELRAAASSSAPASSAASAAAIAQCVQSFITAMDAVKLNMLANDQVRPLLHDL 148

Query: 547 XXXXXXXXXXXXX-FEGKLKVQEWL 618
                         FEGK+KV EWL
Sbjct: 149 STSMGKLGPVLPPDFEGKVKVSEWL 173


>06_01_0198 + 1529190-1530371
          Length = 393

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 17/61 (27%), Positives = 29/61 (47%)
 Frame = -1

Query: 311 LKATLYCTRRRLHAAVYSCARTQSRMYAFSRCFLVHAHFCTI*SLHTIPDVYLASLLFLH 132
           L   ++C  +RLH +     R+    Y  ++ FL + H C + +    P + + SLL L 
Sbjct: 281 LNEAVFCWYQRLHVS-----RSPDTEYGRAKVFLHNHHLCAVATQLVAPPLLVLSLLALW 335

Query: 131 R 129
           R
Sbjct: 336 R 336


>05_01_0210 + 1583176-1584177
          Length = 333

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = +2

Query: 176 EEIKLYKNARERENTWRRHTCVIVCEHRNTRRHAVVSSCSTK 301
           E + L +  RERE+ WR        E R  RRH +V++   K
Sbjct: 289 ERLALVRRWREREDAWRAR-----AEEREERRHQLVAALLAK 325


>06_01_0044 + 415462-416058
          Length = 198

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = +2

Query: 161 RPELYEEIKLYKNARERENTWRRHTCVIVCEHRNT 265
           R E+Y  I      R R + W++  C++  E R T
Sbjct: 94  RGEIYLHINFVARTRARNSHWQKQRCLVFAELRFT 128


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,934,574
Number of Sequences: 37544
Number of extensions: 299273
Number of successful extensions: 611
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 593
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 610
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)