Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8o24
         (620 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC019321-1|AAH19321.1|  221|Homo sapiens vacuolar protein sortin...   167   4e-41
BC006485-1|AAH06485.1|  221|Homo sapiens vacuolar protein sortin...   167   4e-41
AF316887-1|AAK00314.1|  221|Homo sapiens vacuolar sorting protei...   167   4e-41
AF182844-1|AAF00499.1|  221|Homo sapiens VPS28 protein protein.       167   4e-41
BC050713-1|AAH50713.1|  233|Homo sapiens vacuolar protein sortin...   165   1e-40
AK127759-1|BAC87117.1|  294|Homo sapiens r (EC 1.6.5.3).  protein.     35   0.27 
AK057946-1|BAB71619.1|  517|Homo sapiens protein ( Homo sapiens ...    30   5.7  

>BC019321-1|AAH19321.1|  221|Homo sapiens vacuolar protein sorting
           28 homolog (S. cerevisiae) protein.
          Length = 221

 Score =  167 bits (405), Expect = 4e-41
 Identities = 79/137 (57%), Positives = 97/137 (70%)
 Frame = +1

Query: 208 TRKHLEKAYMRDCVRAQEYTAACSRLLVQYKVAFKQVQADEFPNIEAFVAKYRLDCPAAL 387
           T + LEKAY++DCV   EYTAACSRLLVQYK AF+QVQ  E  +I+ F  K+RLDCP A+
Sbjct: 48  TMQALEKAYIKDCVSPSEYTAACSRLLVQYKAAFRQVQGSEISSIDEFCRKFRLDCPLAM 107

Query: 388 ERIRENKPNLIKDDKGNTNKYIAEIVSLFITLMDKLRLEFRAMDMIQPEXXXXXXXXXXX 567
           ERI+E++P  IKDDKGN N+ IA++VSLFIT+MDKLRLE RAMD IQP+           
Sbjct: 108 ERIKEDRPITIKDDKGNLNRCIADVVSLFITVMDKLRLEIRAMDEIQPDLRELMETMHRM 167

Query: 568 XXXXXXFEGKLKVQEWL 618
                 FEG+  V +WL
Sbjct: 168 SHLPPDFEGRQTVSQWL 184



 Score = 39.9 bits (89), Expect = 0.007
 Identities = 16/18 (88%), Positives = 18/18 (100%)
 Frame = +2

Query: 161 RPELYEEIKLYKNARERE 214
           +PELYEE+KLYKNARERE
Sbjct: 17  KPELYEEVKLYKNARERE 34


>BC006485-1|AAH06485.1|  221|Homo sapiens vacuolar protein sorting
           28 homolog (S. cerevisiae) protein.
          Length = 221

 Score =  167 bits (405), Expect = 4e-41
 Identities = 79/137 (57%), Positives = 97/137 (70%)
 Frame = +1

Query: 208 TRKHLEKAYMRDCVRAQEYTAACSRLLVQYKVAFKQVQADEFPNIEAFVAKYRLDCPAAL 387
           T + LEKAY++DCV   EYTAACSRLLVQYK AF+QVQ  E  +I+ F  K+RLDCP A+
Sbjct: 48  TMQALEKAYIKDCVSPSEYTAACSRLLVQYKAAFRQVQGSEISSIDEFCRKFRLDCPLAM 107

Query: 388 ERIRENKPNLIKDDKGNTNKYIAEIVSLFITLMDKLRLEFRAMDMIQPEXXXXXXXXXXX 567
           ERI+E++P  IKDDKGN N+ IA++VSLFIT+MDKLRLE RAMD IQP+           
Sbjct: 108 ERIKEDRPITIKDDKGNLNRCIADVVSLFITVMDKLRLEIRAMDEIQPDLRELMETMHRM 167

Query: 568 XXXXXXFEGKLKVQEWL 618
                 FEG+  V +WL
Sbjct: 168 SHLPPDFEGRQTVSQWL 184



 Score = 39.9 bits (89), Expect = 0.007
 Identities = 16/18 (88%), Positives = 18/18 (100%)
 Frame = +2

Query: 161 RPELYEEIKLYKNARERE 214
           +PELYEE+KLYKNARERE
Sbjct: 17  KPELYEEVKLYKNARERE 34


>AF316887-1|AAK00314.1|  221|Homo sapiens vacuolar sorting protein
           28 protein.
          Length = 221

 Score =  167 bits (405), Expect = 4e-41
 Identities = 79/137 (57%), Positives = 97/137 (70%)
 Frame = +1

Query: 208 TRKHLEKAYMRDCVRAQEYTAACSRLLVQYKVAFKQVQADEFPNIEAFVAKYRLDCPAAL 387
           T + LEKAY++DCV   EYTAACSRLLVQYK AF+QVQ  E  +I+ F  K+RLDCP A+
Sbjct: 48  TMQALEKAYIKDCVSPSEYTAACSRLLVQYKAAFRQVQGSEISSIDEFCRKFRLDCPLAM 107

Query: 388 ERIRENKPNLIKDDKGNTNKYIAEIVSLFITLMDKLRLEFRAMDMIQPEXXXXXXXXXXX 567
           ERI+E++P  IKDDKGN N+ IA++VSLFIT+MDKLRLE RAMD IQP+           
Sbjct: 108 ERIKEDRPITIKDDKGNLNRCIADVVSLFITVMDKLRLEIRAMDEIQPDLRELMETMHRM 167

Query: 568 XXXXXXFEGKLKVQEWL 618
                 FEG+  V +WL
Sbjct: 168 SHLPPDFEGRQTVSQWL 184



 Score = 39.9 bits (89), Expect = 0.007
 Identities = 16/18 (88%), Positives = 18/18 (100%)
 Frame = +2

Query: 161 RPELYEEIKLYKNARERE 214
           +PELYEE+KLYKNARERE
Sbjct: 17  KPELYEEVKLYKNARERE 34


>AF182844-1|AAF00499.1|  221|Homo sapiens VPS28 protein protein.
          Length = 221

 Score =  167 bits (405), Expect = 4e-41
 Identities = 79/137 (57%), Positives = 97/137 (70%)
 Frame = +1

Query: 208 TRKHLEKAYMRDCVRAQEYTAACSRLLVQYKVAFKQVQADEFPNIEAFVAKYRLDCPAAL 387
           T + LEKAY++DCV   EYTAACSRLLVQYK AF+QVQ  E  +I+ F  K+RLDCP A+
Sbjct: 48  TMQALEKAYIKDCVSPSEYTAACSRLLVQYKAAFRQVQGSEISSIDEFCRKFRLDCPLAM 107

Query: 388 ERIRENKPNLIKDDKGNTNKYIAEIVSLFITLMDKLRLEFRAMDMIQPEXXXXXXXXXXX 567
           ERI+E++P  IKDDKGN N+ IA++VSLFIT+MDKLRLE RAMD IQP+           
Sbjct: 108 ERIKEDRPITIKDDKGNLNRCIADVVSLFITVMDKLRLEIRAMDEIQPDLRELMETMHRM 167

Query: 568 XXXXXXFEGKLKVQEWL 618
                 FEG+  V +WL
Sbjct: 168 SHLPPDFEGRQTVSQWL 184



 Score = 39.9 bits (89), Expect = 0.007
 Identities = 16/18 (88%), Positives = 18/18 (100%)
 Frame = +2

Query: 161 RPELYEEIKLYKNARERE 214
           +PELYEE+KLYKNARERE
Sbjct: 17  KPELYEEVKLYKNARERE 34


>BC050713-1|AAH50713.1|  233|Homo sapiens vacuolar protein sorting
           28 homolog (S. cerevisiae) protein.
          Length = 233

 Score =  165 bits (401), Expect = 1e-40
 Identities = 78/136 (57%), Positives = 96/136 (70%)
 Frame = +1

Query: 208 TRKHLEKAYMRDCVRAQEYTAACSRLLVQYKVAFKQVQADEFPNIEAFVAKYRLDCPAAL 387
           T + LEKAY++DCV   EYTAACSRLLVQYK AF+QVQ  E  +I+ F  K+RLDCP A+
Sbjct: 48  TMQALEKAYIKDCVSPSEYTAACSRLLVQYKAAFRQVQGSEISSIDEFCRKFRLDCPLAM 107

Query: 388 ERIRENKPNLIKDDKGNTNKYIAEIVSLFITLMDKLRLEFRAMDMIQPEXXXXXXXXXXX 567
           ERI+E++P  IKDDKGN N+ IA++VSLFIT+MDKLRLE RAMD IQP+           
Sbjct: 108 ERIKEDRPITIKDDKGNLNRCIADVVSLFITVMDKLRLEIRAMDEIQPDLRELMETMHRM 167

Query: 568 XXXXXXFEGKLKVQEW 615
                 FEG+  V +W
Sbjct: 168 SHLPPDFEGRQTVSQW 183



 Score = 39.9 bits (89), Expect = 0.007
 Identities = 16/18 (88%), Positives = 18/18 (100%)
 Frame = +2

Query: 161 RPELYEEIKLYKNARERE 214
           +PELYEE+KLYKNARERE
Sbjct: 17  KPELYEEVKLYKNARERE 34


>AK127759-1|BAC87117.1|  294|Homo sapiens r (EC 1.6.5.3).  protein.
          Length = 294

 Score = 34.7 bits (76), Expect = 0.27
 Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 5/79 (6%)
 Frame = -1

Query: 380 AGQSNLYLATKASILGNSSACTCLKATLY---CTRRRLH--AAVYSCARTQSRMYAFSRC 216
           A  ++++  T A +  ++   TC     +   CT   +H  A +Y+C RT +    +   
Sbjct: 140 AHNAHMHTRTHAHLHTHAHTSTCAHTLAHIHTCTLALMHTHAHIYTCTRTLAHTCTYMHS 199

Query: 215 FLVHAHFCTI*SLHTIPDV 159
              HAH CT+  +HT P V
Sbjct: 200 ---HAHTCTLTHMHTRPCV 215


>AK057946-1|BAB71619.1|  517|Homo sapiens protein ( Homo sapiens
           cDNA FLJ25217 fis, clone REC08938, highly similar to
           Oryctolagus cuniculus Na+/glucose cotransporter-related
           protein ).
          Length = 517

 Score = 30.3 bits (65), Expect = 5.7
 Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = -1

Query: 389 SKAAGQSNLYLATKASILGNS-SACTCLKATLYC 291
           S +  +S+ YL+T  S  G S SACTCL    YC
Sbjct: 16  STSPQRSSPYLSTFRSATGASGSACTCLSCPCYC 49


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 81,316,680
Number of Sequences: 237096
Number of extensions: 1695509
Number of successful extensions: 3729
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3729
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6691573490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)