Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8o23
         (583 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0478 + 17621678-17623768                                         29   2.0  
03_06_0180 + 32175658-32178145,32178765-32178808                       28   4.7  
02_01_0388 + 2812235-2815003                                           28   4.7  
11_04_0433 + 17700273-17700468,17700650-17700765,17702214-17702549     28   6.2  
09_04_0341 + 16820890-16820993,16821082-16821269,16821412-16821416     28   6.2  

>08_02_0478 + 17621678-17623768
          Length = 696

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +2

Query: 146 GQLREVHEVLSNMYQRNNIDWRGYSAGHRTMGVDVAFFLK 265
           G++R+  +V   M +RN + W    AG+   G D+A  L+
Sbjct: 142 GRVRDARQVFDGMPERNTVSWNALIAGYTESG-DMASALE 180


>03_06_0180 + 32175658-32178145,32178765-32178808
          Length = 843

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 12/47 (25%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
 Frame = +2

Query: 146 GQLREVHEVLSNMYQRNNIDWRGYSAGHRTMGV--DVAFFLKHVDEQ 280
           G L   H V  +M ++N + W    A +   G+  +    L+H+ E+
Sbjct: 599 GNLEWAHRVFESMPEKNEVSWNSIIASYGAYGLVKESVSLLRHMQEE 645


>02_01_0388 + 2812235-2815003
          Length = 922

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = +2

Query: 128 GYGWSDGQLREVHEVLSNMYQRNNIDWRGYSAGHRTMG 241
           GY   +G + E  E+   M  RN I W G  AG+   G
Sbjct: 362 GY-MQNGMVNEAKELFDKMPFRNTISWAGMIAGYAQNG 398


>11_04_0433 + 17700273-17700468,17700650-17700765,17702214-17702549
          Length = 215

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = -1

Query: 244 HTHSPMASAIAPPINVITLIHIRENFMHLPQLSIAPPI 131
           HTH+P+   +  P N   +  I +     PQ+ I P I
Sbjct: 114 HTHAPLVETMVEPDNSWMICRIYKKRQRAPQVIIPPSI 151


>09_04_0341 + 16820890-16820993,16821082-16821269,16821412-16821416
          Length = 98

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -3

Query: 338 DHYGDSHGHDHADRRYEHVV 279
           +H+G  HGH HAD    HVV
Sbjct: 79  EHHG--HGHGHADEHQSHVV 96


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,805,735
Number of Sequences: 37544
Number of extensions: 279665
Number of successful extensions: 678
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 654
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 678
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1364465340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)