Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8o23
         (583 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81128-2|CAB03397.2|  232|Caenorhabditis elegans Hypothetical pr...    38   0.004
Z81086-1|CAB03120.2|  258|Caenorhabditis elegans Hypothetical pr...    34   0.064
U13642-8|AAG00040.1|  428|Caenorhabditis elegans Similar to tran...    29   1.8  
U13642-7|AAZ32791.1|  446|Caenorhabditis elegans Similar to tran...    29   1.8  
U28740-6|AAA68322.4|  317|Caenorhabditis elegans Tetraspanin fam...    29   3.2  
AF045639-5|AAC02569.2|  937|Caenorhabditis elegans Osmotic avoid...    29   3.2  
AF031408-1|AAB87064.1|  937|Caenorhabditis elegans olfactory cha...    29   3.2  
AC024756-4|AAX88819.1|  639|Caenorhabditis elegans Hypothetical ...    28   5.6  
AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical ...    27   9.7  

>Z81128-2|CAB03397.2|  232|Caenorhabditis elegans Hypothetical
           protein T23D8.2 protein.
          Length = 232

 Score = 38.3 bits (85), Expect = 0.004
 Identities = 17/81 (20%), Positives = 29/81 (35%)
 Frame = +3

Query: 339 LSLLGCCGAAKEVKCMLLTYYXXXXXXXXXXXXXXXXQFVFREKVLTTLDRELYASVPYY 518
           L  LGCCGA +E  C+ +++                  +   +     +  +L   +  Y
Sbjct: 66  LGFLGCCGAIRENYCLTVSFAVLLALLITCEIAAVIIGYALHDSFRLGIGNQLQTGMVRY 125

Query: 519 GVKHEYTKSWDDTQTYLQCCG 581
                   +WD T    +CCG
Sbjct: 126 HESRGVESAWDKTHQLFECCG 146


>Z81086-1|CAB03120.2|  258|Caenorhabditis elegans Hypothetical
           protein F53B6.1 protein.
          Length = 258

 Score = 34.3 bits (75), Expect = 0.064
 Identities = 38/153 (24%), Positives = 61/153 (39%), Gaps = 11/153 (7%)
 Frame = +3

Query: 156 GRCMKFSLICINVITXXXXXXXXXXXXWVWTSRSFSSTLMSNNMFIASXXXXXXXXXXXX 335
           GR +KFS I   +I+            W+   RS  + L+S ++++              
Sbjct: 13  GRLIKFSYIVTALISILFSISCICYGIWLLARRSQYAELVSPSLYV-DVGRILVIISILS 71

Query: 336 XLSLLGCCGAA-KEVKCMLLTYYXXXXXXXXXXXXXXXXQFVFRE----------KVLTT 482
            L+ L C  A  KE++C + +                     FR+          K+LT+
Sbjct: 72  ILNYLICFYAIFKEMRCFVTSCAVASIVIAVMLIIGGCIGLNFRDQLTHYTPLNLKMLTS 131

Query: 483 LDRELYASVPYYGVKHEYTKSWDDTQTYLQCCG 581
           L RELY +    G+    T+SWD  Q+  +CCG
Sbjct: 132 L-RELYGTHDMKGI----TESWDALQSNFKCCG 159


>U13642-8|AAG00040.1|  428|Caenorhabditis elegans Similar to
           transporter of divalentcations protein 1, isoform a
           protein.
          Length = 428

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 341 EDHYGDSHGHDHADRRYEHVVAH 273
           +DH  DSHGH H    ++H  +H
Sbjct: 377 DDHGHDSHGHSHDHNEHDHGHSH 399


>U13642-7|AAZ32791.1|  446|Caenorhabditis elegans Similar to
           transporter of divalentcations protein 1, isoform b
           protein.
          Length = 446

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 341 EDHYGDSHGHDHADRRYEHVVAH 273
           +DH  DSHGH H    ++H  +H
Sbjct: 395 DDHGHDSHGHSHDHNEHDHGHSH 417


>U28740-6|AAA68322.4|  317|Caenorhabditis elegans Tetraspanin family
           protein 11 protein.
          Length = 317

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +3

Query: 339 LSLLGCCGAAKEVKCMLLTY 398
           ++ LGCCGAAKE + +L  Y
Sbjct: 96  VAFLGCCGAAKEWRPLLCCY 115


>AF045639-5|AAC02569.2|  937|Caenorhabditis elegans Osmotic
           avoidance abnormal protein9 protein.
          Length = 937

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -3

Query: 320 HGHDHADRRYEHVVAHQRA*ERTRRP 243
           HGHD  DR YE  V  ++   R+R P
Sbjct: 745 HGHDRLDRVYEDHVQPEKVPSRSRTP 770


>AF031408-1|AAB87064.1|  937|Caenorhabditis elegans olfactory
           channel protein.
          Length = 937

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -3

Query: 320 HGHDHADRRYEHVVAHQRA*ERTRRP 243
           HGHD  DR YE  V  ++   R+R P
Sbjct: 745 HGHDRLDRVYEDHVQPEKVPSRSRTP 770


>AC024756-4|AAX88819.1|  639|Caenorhabditis elegans Hypothetical
           protein Y34D9A.3 protein.
          Length = 639

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -1

Query: 187 IHIRENFMHLPQLSIAPPIPITL 119
           I I+ NF HLP +S   P P T+
Sbjct: 475 IRIKSNFRHLPDISFLKPNPDTI 497


>AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical
           protein Y39B6A.1 protein.
          Length = 735

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 13/49 (26%), Positives = 20/49 (40%)
 Frame = -3

Query: 338 DHYGDSHGHDHADRRYEHVVAHQRA*ERTRRPHP*SYGQRYSPANQCYY 192
           +H+GD H   H      H   H  A       H   +G  +SPA+  ++
Sbjct: 641 EHHGDHHHGSHGVHHGHHGTHHSLAHHGHHGGHGTHHGAHHSPAHHGHH 689


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,290,074
Number of Sequences: 27780
Number of extensions: 225669
Number of successful extensions: 505
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 469
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 496
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1215936170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)