Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8o19
         (580 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyce...    26   4.6  
SPAC3A12.05c |taf2||TATA-binding protein associated factor Taf2|...    25   6.1  

>SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +2

Query: 71  IAPNTFLCRFELRTGSLFYGILLTSAMVICTITMIVD 181
           + P   LCR   ++    Y ILL + + +C I++++D
Sbjct: 71  LLPIFLLCRCICKSNCSPYPILLFTRLYMCLISLLID 107


>SPAC3A12.05c |taf2||TATA-binding protein associated factor
           Taf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1174

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 18/69 (26%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
 Frame = +2

Query: 125 YGILLTSAMVICTITMIVDTVNLIKNTECSKTVTSYRITA--GVYCLFMLCVHLWLIWGV 298
           + I+ T ++VI + +++    +L +  + +KT+T    +   GVY +      LWLI+G+
Sbjct: 353 FPIISTPSLVISSNSILYPKDSLDQIYDSTKTLTWALASQWIGVYLIPKAWSDLWLIYGL 412

Query: 299 KKEKASVFL 325
                 +FL
Sbjct: 413 SYYICGLFL 421


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,339,702
Number of Sequences: 5004
Number of extensions: 46864
Number of successful extensions: 164
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)