Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8o19
         (580 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66500-8|CAE17939.1|  312|Caenorhabditis elegans Hypothetical pr...    34   0.063
Z81564-6|CAB04572.1|  678|Caenorhabditis elegans Hypothetical pr...    28   4.2  
AF016853-1|AAB94552.1|  678|Caenorhabditis elegans HMP-2 protein.      28   4.2  
U97403-9|AAB52469.1|  389|Caenorhabditis elegans Hypothetical pr...    27   7.3  
AF068709-10|AAC19252.2|  345|Caenorhabditis elegans Seven tm rec...    27   7.3  
Z81522-3|CAB04234.2|  167|Caenorhabditis elegans Hypothetical pr...    27   9.6  
U55363-6|AAA97964.1|  522|Caenorhabditis elegans Defective sperm...    27   9.6  
U39649-1|AAA80383.2|  437|Caenorhabditis elegans Temporarily ass...    27   9.6  

>Z66500-8|CAE17939.1|  312|Caenorhabditis elegans Hypothetical
           protein T05C12.11 protein.
          Length = 312

 Score = 34.3 bits (75), Expect = 0.063
 Identities = 21/85 (24%), Positives = 38/85 (44%)
 Frame = -2

Query: 414 TAPSLTFKQICTRSRQQTWASHMAVNTVQPRNTEAFSFLTPHISHKWTHNMNKQYTPAVI 235
           T PS +  +  T++    W+      T+    T + S   P +   WTH +NK+++   +
Sbjct: 218 TTPSTSTSRTTTKNDTNKWSKF----TLGKNPTVSSSTSEPKMESSWTHAVNKEWSITFV 273

Query: 234 L*LVTVFEHSVFLIKFTVSTIMVIV 160
           L  V V    +FL  F   T+  ++
Sbjct: 274 LCSVIVCTIMLFLAVFGTFTVFYLM 298


>Z81564-6|CAB04572.1|  678|Caenorhabditis elegans Hypothetical
           protein K05C4.6 protein.
          Length = 678

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 16/46 (34%), Positives = 26/46 (56%)
 Frame = -1

Query: 274 DTQHEQTVHSCGDPVACDGLRALRVLDQVHRIHDHGYCANHHCTCQ 137
           +T+++QTV S G   A   + A+R L +V  + +   CA  HCT +
Sbjct: 361 NTRNKQTVCSHGGIDAL--VTAIRRLPEVEEVTEPALCALRHCTAR 404


>AF016853-1|AAB94552.1|  678|Caenorhabditis elegans HMP-2 protein.
          Length = 678

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 16/46 (34%), Positives = 26/46 (56%)
 Frame = -1

Query: 274 DTQHEQTVHSCGDPVACDGLRALRVLDQVHRIHDHGYCANHHCTCQ 137
           +T+++QTV S G   A   + A+R L +V  + +   CA  HCT +
Sbjct: 361 NTRNKQTVCSHGGIDAL--VTAIRRLPEVEEVTEPALCALRHCTAR 404


>U97403-9|AAB52469.1|  389|Caenorhabditis elegans Hypothetical
           protein T10E9.1 protein.
          Length = 389

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +1

Query: 55  NVVRSYRTKYIFMPFRTKNRFIILWHIIDKCNGDLHN 165
           N+  S + + IF  +R   +  +LW + DKC+G L N
Sbjct: 147 NMESSLKVQSIF--WRNPRKCDLLWKMFDKCDGSLLN 181


>AF068709-10|AAC19252.2|  345|Caenorhabditis elegans Seven tm
           receptor protein 33 protein.
          Length = 345

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 14/28 (50%), Positives = 19/28 (67%)
 Frame = -2

Query: 108 LSSKRHKNVFGAIRSNHILFGLLKLKFS 25
           L+++R KN+ GA +   ILF LL L FS
Sbjct: 30  LTARRTKNITGAYKYMIILFALLGLIFS 57


>Z81522-3|CAB04234.2|  167|Caenorhabditis elegans Hypothetical
           protein F32B4.2 protein.
          Length = 167

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 13/56 (23%), Positives = 27/56 (48%)
 Frame = +1

Query: 337 IDGHVAGPSLLSASRTDLFECQRRCCFGVANSRRGSSNDTILRDTSRPRIQTGSNT 504
           + G V G + L A     +  Q++     +++    SND ++  +S PR   G+++
Sbjct: 11  VTGVVVGGAALLAIAAYYYWSQKKKSSDTSSATSSESNDVVMMSSSEPRADGGADS 66


>U55363-6|AAA97964.1|  522|Caenorhabditis elegans Defective
           spermatogenesis protein39, isoform a protein.
          Length = 522

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +1

Query: 172 DRGYGELDQEHGVLEDRHKLQDHRR 246
           D  Y  L QEH  L+D+H++  H R
Sbjct: 140 DLDYNRLRQEHRKLKDQHEVLRHER 164


>U39649-1|AAA80383.2|  437|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 249 protein.
          Length = 437

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +1

Query: 157 LHNNHDRGYGELDQEHGVLEDRHKLQ 234
           LH+ + R + ELD + G  + RH+L+
Sbjct: 346 LHHMNKRDWPELDTDEGYAKQRHRLE 371


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,112,287
Number of Sequences: 27780
Number of extensions: 275816
Number of successful extensions: 827
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 800
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 827
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1205362812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)