Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8o09
         (647 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC338.15 |||dolichyl-di-phosphooligosaccharide-protein glycotr...   102   5e-23
SPBC1677.03c |||threonine ammonia-lyase|Schizosaccharomyces pomb...    27   2.3  
SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   3.1  
SPCC594.07c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    25   9.4  
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S...    25   9.4  

>SPCC338.15 |||dolichyl-di-phosphooligosaccharide-protein
           glycotransferase subunit |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 437

 Score =  102 bits (244), Expect = 5e-23
 Identities = 50/138 (36%), Positives = 79/138 (57%), Gaps = 5/138 (3%)
 Frame = +1

Query: 1   ITDTVVYRIEIEELKNGKWQPFEANDVQLEFVRIDPFIRTTLQKKPNGV-----YEAVFK 165
           I D +++ I+I  L++G+  P+ A+DVQLE + +DP+ R  L   P+       YEAV  
Sbjct: 295 IKDEMIFSIDISLLEDGQQTPYVADDVQLELIMLDPYYRVNLVPVPSDSQTSQHYEAVLV 354

Query: 166 VPDVWGVYQFKVDYDRVGYTRLYHSTQVSVRPLQHTQYERFIPSAYPYYVSSFSMMIGVF 345
            PD +G + FK++Y R G T +   +  ++R   H ++ RF+P AYPYY S FS++    
Sbjct: 355 APDHYGDFTFKIEYKRPGLTPIEEKSTFTLRQFFHNEFPRFLPHAYPYYASCFSVLGAFL 414

Query: 346 LFSFVFLYYKEDQPKTKS 399
           LF  ++L  K  +P   S
Sbjct: 415 LFCGIWLLQKPAKPVVPS 432


>SPBC1677.03c |||threonine ammonia-lyase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 600

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = +1

Query: 109 FIRTTLQKKPNGVYEAVFKVPDVWGVYQFKVDYDRVGYTRLYHSTQVSVR 258
           F+  T+ ++P G +EA+  +     + +F   YD   Y  +Y S  V  R
Sbjct: 426 FLSVTIPERP-GSFEALHNIITPRSITEFSYRYDNDDYANIYTSFVVKDR 474


>SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 646

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
 Frame = +1

Query: 307 YYVSSFSMMIGVFLFSFVFLYYKEDQPKTKSE*M--KC*FVCNVYLMLNILSQ*VM 468
           Y +S  + +  +FL  F+ L  KED  K     +  +  F+ N Y +LN+L+  V+
Sbjct: 374 YNLSDLADVQAIFLSRFILLRKKEDCKKLLEHVLPIRQLFLLNCYSLLNVLANYVV 429


>SPCC594.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 255

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 146 SMRLSSKFQMSGVFISSKWITT 211
           SM  S+ FQ+ G ++S  WI T
Sbjct: 226 SMNWSAMFQVVGAYLSQIWIIT 247


>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 971

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +1

Query: 172 DVWGVYQFKVDYDRVGYTRLYHST 243
           D W  Y F     R+GY RL+ ST
Sbjct: 887 DRWCQYIFYRGVKRIGYARLHRST 910


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,607,673
Number of Sequences: 5004
Number of extensions: 52905
Number of successful extensions: 131
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)