Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8o08
         (165 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|ch...    30   0.047
SPAC1399.01c |||purine permease |Schizosaccharomyces pombe|chr 1...    29   0.062
SPAC3H1.06c |||membrane transporter |Schizosaccharomyces pombe|c...    28   0.19 
SPBC1271.09 |||glycerophosphodiester transporter|Schizosaccharom...    26   0.77 
SPBC1683.12 |||nicotinic acid plasma membrane transporter |Schiz...    26   0.77 
SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|ch...    23   4.1  
SPBC1289.07c |rpc40|rpa42|DNA-directed RNA polymerase I and III ...    23   4.1  
SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa...    23   5.4  
SPBC25D12.03c |mcm7||MCM complex subunit Mcm7|Schizosaccharomyce...    22   9.4  
SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||M...    22   9.4  
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo...    22   9.4  
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T...    22   9.4  
SPAC16C9.01c ||SPAC4G8.14c|carbohydrate kinase |Schizosaccharomy...    22   9.4  
SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|...    22   9.4  

>SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 589

 Score = 29.9 bits (64), Expect = 0.047
 Identities = 17/50 (34%), Positives = 24/50 (48%)
 Frame = +3

Query: 3   IISDRYGRKSTLITSVVLEVITGIMSSFMPDFWSFTIIRXILGXSVGGIM 152
           I+S+  GRK  L TS+VL +    M     +     + R + G   GGIM
Sbjct: 147 IMSEVVGRKIVLYTSIVLFLFGSAMCGAAQNMLWLVLCRAVQGIGGGGIM 196


>SPAC1399.01c |||purine permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 601

 Score = 29.5 bits (63), Expect = 0.062
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +3

Query: 3   IISDRYGRKSTLITSVVLEVITGIMSSFMPDFWSFTII 116
           II +R+G      TSVVL ++ G++ S    +W  +II
Sbjct: 282 IIIERFGPPLMKTTSVVLGLVVGMIISAATGYWDHSII 319


>SPAC3H1.06c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 589

 Score = 27.9 bits (59), Expect = 0.19
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = +3

Query: 3   IISDRYGRKSTLITSVVLEVITGIMSSFMPDFWSFTIIRXILGXSVGGI 149
           I+S+  GRK  L TS+VL +    M     +     + R + G   GGI
Sbjct: 147 IMSEVVGRKIVLYTSIVLFLFGSAMCGAAQNMLWLVLCRAVQGIGGGGI 195


>SPBC1271.09 |||glycerophosphodiester
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 543

 Score = 25.8 bits (54), Expect = 0.77
 Identities = 8/20 (40%), Positives = 17/20 (85%)
 Frame = +3

Query: 9   SDRYGRKSTLITSVVLEVIT 68
           SDR+GRK+ +IT+ ++ +++
Sbjct: 139 SDRFGRKNGMITATIILIVS 158


>SPBC1683.12 |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 482

 Score = 25.8 bits (54), Expect = 0.77
 Identities = 11/48 (22%), Positives = 23/48 (47%)
 Frame = +3

Query: 3   IISDRYGRKSTLITSVVLEVITGIMSSFMPDFWSFTIIRXILGXSVGG 146
           ++  ++G    L   ++   +  I + F+  +WS  + R +LG   GG
Sbjct: 101 LLVKKFGPHYYLSAMIIGWSLVTIFTCFVRHYWSLVLTRLLLGICEGG 148


>SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 547

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 12/42 (28%), Positives = 19/42 (45%)
 Frame = +3

Query: 6   ISDRYGRKSTLITSVVLEVITGIMSSFMPDFWSFTIIRXILG 131
           +S+ YGR      ++V+ V+  I      + WS  I R   G
Sbjct: 167 LSEVYGRLPLYSVTLVIFVVFQIGGGCSKNIWSLVIFRFFHG 208


>SPBC1289.07c |rpc40|rpa42|DNA-directed RNA polymerase I and III
          subunit Rpc40 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 348

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -3

Query: 73 IPVITSRTTDVINVDFLPYLSD 8
          I V++ R TDV +VDF  Y  D
Sbjct: 11 ISVLSDRVTDVGSVDFPGYYFD 32


>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
           Par2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 627

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +2

Query: 89  ARFLEFYHYQXDSRXLCGWYN 151
           AR +   H+Q   R LC W N
Sbjct: 512 ARSISSMHFQVAERALCLWSN 532


>SPBC25D12.03c |mcm7||MCM complex subunit Mcm7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 760

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = -3

Query: 79  DIIPVITSRTTDVINVD 29
           DI+  I++R ++VINVD
Sbjct: 58  DILQKISNRESNVINVD 74


>SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1258

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -2

Query: 74  YSSNHFKNYRCNQCRLSA 21
           YS+NHF +   + C+ SA
Sbjct: 152 YSANHFLHNAVSTCKYSA 169


>SPAC29A4.11 |rga3||GTPase activating protein
           Rga3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 969

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 7/23 (30%), Positives = 12/23 (52%)
 Frame = -2

Query: 74  YSSNHFKNYRCNQCRLSAVSVRY 6
           Y S H + +RC+ CR   +   +
Sbjct: 94  YDSYHRECFRCHDCRKQIIDSNF 116


>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 988

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 6/22 (27%), Positives = 16/22 (72%)
 Frame = -3

Query: 82  DDIIPVITSRTTDVINVDFLPY 17
           + ++ +++ +T+D + VDF+ Y
Sbjct: 649 EKVVQLLSMKTSDTLFVDFVDY 670


>SPAC16C9.01c ||SPAC4G8.14c|carbohydrate kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 361

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = +2

Query: 62  DYWNNVIVYARFLEFYHY 115
           D WN   V+ R  E+Y +
Sbjct: 327 DLWNGESVFQRLKEYYEF 344


>SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 618

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -3

Query: 70  PVITSRTTDVINVDFLPYLSDM 5
           P +  + TDV N   LPY+S++
Sbjct: 342 PGLYLKQTDVRNTTQLPYISEL 363


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 624,846
Number of Sequences: 5004
Number of extensions: 8090
Number of successful extensions: 36
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36
length of database: 2,362,478
effective HSP length: 35
effective length of database: 2,187,338
effective search space used: 41559422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)