Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8o08
         (165 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11833| Best HMM Match : No HMM Matches (HMM E-Value=.)              51   1e-07
SB_35860| Best HMM Match : Sugar_tr (HMM E-Value=1e-04)                47   3e-06
SB_25976| Best HMM Match : RVT_1 (HMM E-Value=5.3e-22)                 42   6e-05
SB_58285| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.007
SB_55040| Best HMM Match : TatC (HMM E-Value=0.59)                     35   0.009
SB_58306| Best HMM Match : Sugar_tr (HMM E-Value=2.6e-05)              34   0.016
SB_18740| Best HMM Match : MFS_1 (HMM E-Value=1.1e-15)                 34   0.021
SB_28947| Best HMM Match : Sugar_tr (HMM E-Value=2.1e-06)              32   0.063
SB_55039| Best HMM Match : MFS_1 (HMM E-Value=5.3)                     31   0.11 
SB_53613| Best HMM Match : Sugar_tr (HMM E-Value=0.00012)              31   0.15 
SB_1462| Best HMM Match : MFS_1 (HMM E-Value=0.042)                    31   0.15 
SB_18704| Best HMM Match : MFS_1 (HMM E-Value=0.034)                   31   0.19 
SB_52873| Best HMM Match : Oleosin (HMM E-Value=3)                     30   0.25 
SB_37752| Best HMM Match : MFS_1 (HMM E-Value=0.11)                    30   0.34 
SB_17113| Best HMM Match : Sugar_tr (HMM E-Value=0.015)                29   0.59 
SB_9634| Best HMM Match : zf-C2H2 (HMM E-Value=0)                      27   1.8  
SB_43212| Best HMM Match : MFS_1 (HMM E-Value=0.00051)                 27   3.1  
SB_8625| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   3.1  
SB_52793| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   4.1  

>SB_11833| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 636

 Score = 51.2 bits (117), Expect = 1e-07
 Identities = 20/54 (37%), Positives = 32/54 (59%)
 Frame = +3

Query: 3   IISDRYGRKSTLITSVVLEVITGIMSSFMPDFWSFTIIRXILGXSVGGIMVVGF 164
           IISD++GRK  +   V+   + G+ S+F   +W F + R +LG  +GG  + GF
Sbjct: 273 IISDKFGRKIVVFPCVIFASLCGLASAFANKYWVFALFRALLGAGIGGYSICGF 326



 Score = 27.1 bits (57), Expect = 2.4
 Identities = 8/29 (27%), Positives = 19/29 (65%)
 Frame = +3

Query: 12  DRYGRKSTLITSVVLEVITGIMSSFMPDF 98
           DR+GRK T++ S+ +  +  I+++ +  +
Sbjct: 466 DRFGRKKTIVASMYVAALAAIVAALLSQY 494


>SB_35860| Best HMM Match : Sugar_tr (HMM E-Value=1e-04)
          Length = 544

 Score = 46.8 bits (106), Expect = 3e-06
 Identities = 19/54 (35%), Positives = 31/54 (57%)
 Frame = +3

Query: 3   IISDRYGRKSTLITSVVLEVITGIMSSFMPDFWSFTIIRXILGXSVGGIMVVGF 164
           I+SD+YGR+  L  S  +       SSF+P +W + + R  +G  +GG +V+ F
Sbjct: 113 ILSDKYGRRKVLFISSCMVCWVAFASSFVPYYWLYAVFRFFIGFGLGGSIVILF 166


>SB_25976| Best HMM Match : RVT_1 (HMM E-Value=5.3e-22)
          Length = 1421

 Score = 42.3 bits (95), Expect = 6e-05
 Identities = 16/47 (34%), Positives = 27/47 (57%)
 Frame = +3

Query: 3   IISDRYGRKSTLITSVVLEVITGIMSSFMPDFWSFTIIRXILGXSVG 143
           II D++GRK  +   V+   + G+ S+F   +W F + R +LG  +G
Sbjct: 527 IIGDKFGRKIVVFPCVIFASLCGLASAFANKYWVFALFRALLGAGIG 573


>SB_58285| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 547

 Score = 35.5 bits (78), Expect = 0.007
 Identities = 16/53 (30%), Positives = 28/53 (52%)
 Frame = +3

Query: 6   ISDRYGRKSTLITSVVLEVITGIMSSFMPDFWSFTIIRXILGXSVGGIMVVGF 164
           +SDR GR+  +    +  +   ++S+  P FW F + R I+G  +GG  +  F
Sbjct: 127 LSDRTGRRYVVYFGSLGLLAAAVVSALSPFFWLFVLSRAIVGVMIGGSSLCQF 179


>SB_55040| Best HMM Match : TatC (HMM E-Value=0.59)
          Length = 275

 Score = 35.1 bits (77), Expect = 0.009
 Identities = 16/51 (31%), Positives = 25/51 (49%)
 Frame = +3

Query: 3   IISDRYGRKSTLITSVVLEVITGIMSSFMPDFWSFTIIRXILGXSVGGIMV 155
           +ISD +GRK     S  L V+ G+   F+     F  +R ++G    G M+
Sbjct: 131 LISDAWGRKKCFYLSYALMVVAGVSCVFVDCISFFAFLRFVVGAGTAGAML 181


>SB_58306| Best HMM Match : Sugar_tr (HMM E-Value=2.6e-05)
          Length = 457

 Score = 34.3 bits (75), Expect = 0.016
 Identities = 16/51 (31%), Positives = 28/51 (54%)
 Frame = +3

Query: 3   IISDRYGRKSTLITSVVLEVITGIMSSFMPDFWSFTIIRXILGXSVGGIMV 155
           +ISD +GRK  L  S  L  + G+ S+ +     F  +R ++G  + G+M+
Sbjct: 96  VISDAWGRKKCLFISYTLLGVAGVGSACVDCVSFFAFLRFVVGFGLTGVML 146


>SB_18740| Best HMM Match : MFS_1 (HMM E-Value=1.1e-15)
          Length = 839

 Score = 33.9 bits (74), Expect = 0.021
 Identities = 15/53 (28%), Positives = 28/53 (52%)
 Frame = +3

Query: 6   ISDRYGRKSTLITSVVLEVITGIMSSFMPDFWSFTIIRXILGXSVGGIMVVGF 164
           +SDR+GR+  +  S+ L  + G  S F      F ++R + G +  G ++V +
Sbjct: 139 VSDRFGRRIGVFISIALLAVCGTTSGFSNCLSLFILLRFVTGMANAGCLLVRY 191


>SB_28947| Best HMM Match : Sugar_tr (HMM E-Value=2.1e-06)
          Length = 624

 Score = 32.3 bits (70), Expect = 0.063
 Identities = 15/54 (27%), Positives = 29/54 (53%)
 Frame = +3

Query: 3   IISDRYGRKSTLITSVVLEVITGIMSSFMPDFWSFTIIRXILGXSVGGIMVVGF 164
           +ISD +GR+  +  S  + VI+G+ +SF        ++R  +G S+   M+  +
Sbjct: 76  LISDAFGRRLCMFLSCGILVISGVAASFADCLSLLGLLRFCIGFSLASFMLSSY 129


>SB_55039| Best HMM Match : MFS_1 (HMM E-Value=5.3)
          Length = 509

 Score = 31.5 bits (68), Expect = 0.11
 Identities = 17/46 (36%), Positives = 29/46 (63%), Gaps = 2/46 (4%)
 Frame = +3

Query: 6   ISDRYGRKSTLITSVVLEVITGIMSSFM--PDFWSFTIIRXILGXS 137
           +SDR GRK   + S ++ +I+   SSF+  P F++F  +R ++G S
Sbjct: 122 LSDRLGRKKWCLYSAIILLISSTSSSFVDCPSFFAF--LRFVVGMS 165


>SB_53613| Best HMM Match : Sugar_tr (HMM E-Value=0.00012)
          Length = 466

 Score = 31.1 bits (67), Expect = 0.15
 Identities = 14/54 (25%), Positives = 28/54 (51%)
 Frame = +3

Query: 3   IISDRYGRKSTLITSVVLEVITGIMSSFMPDFWSFTIIRXILGXSVGGIMVVGF 164
           ++SD +GRK+ L     + +  G+ S+ +     F  +R ++G  + G M+  F
Sbjct: 130 MVSDAWGRKNCLFLFTGIMLAAGVASALVDCVSFFAFLRFLVGFGLSGAMLSQF 183


>SB_1462| Best HMM Match : MFS_1 (HMM E-Value=0.042)
          Length = 277

 Score = 31.1 bits (67), Expect = 0.15
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = +3

Query: 6   ISDRYGRKSTLITSVVLEVITGIMSSFMPDFWSFTIIRXILGXSV 140
           +SD +GRK TL  SV L+    I +SF+    +  I+    G S+
Sbjct: 166 VSDAFGRKITLTVSVALQAAAFIGASFVTSHIALIILLFFAGLSL 210


>SB_18704| Best HMM Match : MFS_1 (HMM E-Value=0.034)
          Length = 363

 Score = 30.7 bits (66), Expect = 0.19
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = +3

Query: 6   ISDRYGRKSTLITSVVLEVITGIMSSFMPDFWSFTIIRXILGXSV 140
           +SD +GRK TL  SV L+    I +SF+    +  I+    G S+
Sbjct: 169 VSDAFGRKITLTVSVALQAAAFIGASFVTSHIALIILIFFAGLSL 213


>SB_52873| Best HMM Match : Oleosin (HMM E-Value=3)
          Length = 152

 Score = 30.3 bits (65), Expect = 0.25
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +3

Query: 36  LITSVVLEVITGIMSSFMPDFWSFTIIRXILGXSVGGI 149
           LI S V     G++S+F P +     +R I+G  +GGI
Sbjct: 57  LIVSSVAVAYAGLLSAFSPSYPWLLFLRGIVGFGLGGI 94


>SB_37752| Best HMM Match : MFS_1 (HMM E-Value=0.11)
          Length = 302

 Score = 29.9 bits (64), Expect = 0.34
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +3

Query: 6   ISDRYGRKSTLITSVVLEVITGIMSSFMPDFWSFTIIRXILGXSV 140
           +SD +GRK +L  SV L+    I +SF+    +  I+    G S+
Sbjct: 75  LSDAFGRKISLTVSVALQAAAFIGASFVTSHTALIILIFFAGLSI 119


>SB_17113| Best HMM Match : Sugar_tr (HMM E-Value=0.015)
          Length = 292

 Score = 29.1 bits (62), Expect = 0.59
 Identities = 14/53 (26%), Positives = 25/53 (47%)
 Frame = +3

Query: 6   ISDRYGRKSTLITSVVLEVITGIMSSFMPDFWSFTIIRXILGXSVGGIMVVGF 164
           ISD +GR+ ++  S+ L    GI+S        F + R   G +  G ++  +
Sbjct: 20  ISDHFGRRLSMFLSIFLMAACGIVSGVSDCLSMFALFRFGAGAACAGCLLARY 72


>SB_9634| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 587

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -2

Query: 77  HYSSNHFKNYRCNQCRL 27
           HY S H K YRC +C L
Sbjct: 205 HYISAHKKEYRCGKCDL 221


>SB_43212| Best HMM Match : MFS_1 (HMM E-Value=0.00051)
          Length = 446

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = +3

Query: 9   SDRYGRKSTLITSVVLEVITGIMSSFMPDFWSFTIIRXILGXSVGG 146
           SDR GRK+ +I   V  ++  I       F+S  +   I+G  + G
Sbjct: 91  SDRVGRKAIMILPPVGNILMNINYMLNVHFFSLNVNYLIIGIVIAG 136


>SB_8625| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 390

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 10/30 (33%), Positives = 21/30 (70%)
 Frame = +3

Query: 6   ISDRYGRKSTLITSVVLEVITGIMSSFMPD 95
           ++DRYG +   ++S ++ +I  + SSF+P+
Sbjct: 287 LTDRYGCRVVFMSSSLITIIGLVSSSFVPN 316


>SB_52793| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 532

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 11/48 (22%), Positives = 23/48 (47%)
 Frame = +3

Query: 3   IISDRYGRKSTLITSVVLEVITGIMSSFMPDFWSFTIIRXILGXSVGG 146
           + +  + RK+ L+  ++L     +++ F   +W   + R ILG    G
Sbjct: 131 LFTGTFNRKNILVFCLLLWSGMTLLTGFSTTYWHLLVTRFILGIGEAG 178


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,750,809
Number of Sequences: 59808
Number of extensions: 64371
Number of successful extensions: 176
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 16,821,457
effective HSP length: 34
effective length of database: 14,787,985
effective search space used: 295759700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)