Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte8o08
(165 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g20660.1 68416.m02615 organic cation transporter family prote... 47 2e-06
At3g13050.1 68416.m01626 transporter-related low similarity to a... 43 2e-05
At1g73220.1 68414.m08474 sugar transporter family protein contai... 38 0.001
At4g16480.1 68417.m02495 sugar transporter family protein simila... 35 0.008
At5g13750.2 68418.m01601 transporter-related 32 0.045
At5g13750.1 68418.m01600 transporter-related 32 0.045
At3g51490.1 68416.m05639 sugar transporter family protein simila... 32 0.045
At1g79360.1 68414.m09248 transporter-related low similarity to S... 31 0.10
At1g16370.1 68414.m01958 transporter-related low similarity to o... 31 0.14
At5g17010.3 68418.m01994 sugar transporter family protein simila... 30 0.18
At5g17010.2 68418.m01993 sugar transporter family protein simila... 30 0.18
At5g17010.1 68418.m01992 sugar transporter family protein simila... 30 0.18
At5g13740.1 68418.m01599 sugar transporter family protein contai... 30 0.18
At3g43790.3 68416.m04680 transporter-related low similarity to S... 30 0.24
At3g43790.2 68416.m04679 transporter-related low similarity to S... 30 0.24
At3g43790.1 68416.m04678 transporter-related low similarity to S... 30 0.24
At1g15740.1 68414.m01888 leucine-rich repeat family protein 30 0.24
At4g21480.1 68417.m03106 glucose transporter, putative similar t... 28 0.73
At1g20840.1 68414.m02611 transporter-related low similarity to D... 28 0.73
At1g16390.1 68414.m01960 organic cation transporter-related low ... 27 1.3
At5g59250.1 68418.m07425 sugar transporter family protein simila... 27 1.7
At1g11260.1 68414.m01289 glucose transporter (STP1) nearly ident... 27 2.2
At1g63910.1 68414.m07236 myb family transcription factor (MYB103... 26 2.9
At1g50310.1 68414.m05640 monosaccharide transporter (STP9) ident... 26 2.9
At2g43330.1 68415.m05388 sugar transporter family protein simila... 26 3.9
At5g04900.1 68418.m00515 short-chain dehydrogenase/reductase (SD... 25 5.1
At3g20460.1 68416.m02590 sugar transporter, putative similar to ... 25 5.1
At3g25840.1 68416.m03219 protein kinase family protein contains ... 25 6.8
At2g16980.2 68415.m01957 expressed protein 25 6.8
At2g16980.1 68415.m01956 expressed protein 25 6.8
At4g25800.1 68417.m03712 calmodulin-binding protein similar to c... 25 9.0
At2g20780.1 68415.m02442 mannitol transporter, putative similar ... 25 9.0
At1g79410.1 68414.m09254 transporter-related low similarity to o... 25 9.0
>At3g20660.1 68416.m02615 organic cation transporter family protein
similar to organic cation transporter OCT3 [Rattus
norvegicus] GI:3273722, organic cation transporter 3
[Mus musculus] GI:4454795; contains Pfam profile
PF00083: major facilitator superfamily protein
Length = 534
Score = 46.8 bits (106), Expect = 2e-06
Identities = 18/54 (33%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Frame = +3
Query: 6 ISD-RYGRKSTLITSVVLEVITGIMSSFMPDFWSFTIIRXILGXSVGGIMVVGF 164
+SD + GRK +L ++ I GI ++F P++W++ ++R + G S GG+ + F
Sbjct: 153 LSDSKLGRKGSLTVVCIINAIFGIATAFSPNYWTYVVLRFLTGFSTGGVGLTAF 206
>At3g13050.1 68416.m01626 transporter-related low similarity to
apical organic cation transporter [Sus scrofa]
GI:2062135, SP|Q02563 Synaptic vesicle protein 2 (SV2)
{Rattus norvegicus}; contains Pfam profile PF00083:
major facilitator superfamily protein
Length = 500
Score = 43.2 bits (97), Expect = 2e-05
Identities = 16/48 (33%), Positives = 31/48 (64%)
Frame = +3
Query: 3 IISDRYGRKSTLITSVVLEVITGIMSSFMPDFWSFTIIRXILGXSVGG 146
I+SD++GR+ I + V+ + G +S+F P++ I+R ++G +GG
Sbjct: 82 IVSDKHGRRKGFIITAVVTFVAGFLSAFSPNYMWLIILRCLVGLGLGG 129
>At1g73220.1 68414.m08474 sugar transporter family protein contains
Pfam profile: PF00083 sugar (and other) transporter
Length = 539
Score = 37.5 bits (83), Expect = 0.001
Identities = 17/44 (38%), Positives = 23/44 (52%)
Frame = +3
Query: 18 YGRKSTLITSVVLEVITGIMSSFMPDFWSFTIIRXILGXSVGGI 149
+GRK TL+ S VL +T SF P+ W + +R G GI
Sbjct: 162 FGRKKTLLLSCVLTFVTAFAISFSPNVWVYAFLRFANGFFRSGI 205
>At4g16480.1 68417.m02495 sugar transporter family protein similar
to SP|Q96QE2 Proton myo-inositol co-transporter (Hmit)
[Homo sapiens]; contains Pfam profile PF00083: major
facilitator superfamily protein
Length = 582
Score = 34.7 bits (76), Expect = 0.008
Identities = 15/46 (32%), Positives = 28/46 (60%)
Frame = +3
Query: 6 ISDRYGRKSTLITSVVLEVITGIMSSFMPDFWSFTIIRXILGXSVG 143
I+D++GR+ +++ + VL +I I+ +F P W + R +G VG
Sbjct: 90 INDKFGRRMSILIADVLFLIGAIVMAFAPAPWVIIVGRIFVGFGVG 135
>At5g13750.2 68418.m01601 transporter-related
Length = 392
Score = 32.3 bits (70), Expect = 0.045
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = +3
Query: 3 IISDRYGRKSTLITSVVLEVITGIMSSFMPDFWSFTIIRXILGXSVGGIM 152
+++DRYGRK ++ V+ + +FW I R LG S G++
Sbjct: 13 LVADRYGRKPVILIGTASVVVFNTLFGLSLNFWMAIITRFCLG-SFNGLL 61
>At5g13750.1 68418.m01600 transporter-related
Length = 478
Score = 32.3 bits (70), Expect = 0.045
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = +3
Query: 3 IISDRYGRKSTLITSVVLEVITGIMSSFMPDFWSFTIIRXILGXSVGGIM 152
+++DRYGRK ++ V+ + +FW I R LG S G++
Sbjct: 99 LVADRYGRKPVILIGTASVVVFNTLFGLSLNFWMAIITRFCLG-SFNGLL 147
>At3g51490.1 68416.m05639 sugar transporter family protein similar
to D-xylose proton-symporter [Lactobacillus brevis]
GI:2895856; contains Pfam profile PF00083: major
facilitator superfamily protein
Length = 729
Score = 32.3 bits (70), Expect = 0.045
Identities = 15/46 (32%), Positives = 26/46 (56%)
Frame = +3
Query: 6 ISDRYGRKSTLITSVVLEVITGIMSSFMPDFWSFTIIRXILGXSVG 143
+SD+ GR+S LI S VL ++ I+ + P+ + R + G +G
Sbjct: 66 VSDKVGRRSMLILSSVLYFLSSIVMFWSPNVYVLLFARLLDGFGIG 111
>At1g79360.1 68414.m09248 transporter-related low similarity to
SP|O76082 Organic cation/carnitine transporter 2 (Solute
carrier family 22, member 5) (High-affinity
sodium-dependent carnitine cotransporter) {Homo
sapiens}; contains Pfam profile PF00083: major
facilitator superfamily protein
Length = 527
Score = 31.1 bits (67), Expect = 0.10
Identities = 11/37 (29%), Positives = 23/37 (62%)
Frame = +3
Query: 21 GRKSTLITSVVLEVITGIMSSFMPDFWSFTIIRXILG 131
GRK+ L S ++ I+ +++ F P+ W + ++R + G
Sbjct: 140 GRKNMLFLSCLVMAISTMLTVFSPNIWVYAVLRFVNG 176
>At1g16370.1 68414.m01958 transporter-related low similarity to
organic cation transporter OCTN1 from [Homo sapiens]
GI:2605501, [Mus musculus] GI:4126605, [Rattus
norvegicus] GI:5679326; contains Pfam profile PF00083:
major facilitator superfamily protein
Length = 521
Score = 30.7 bits (66), Expect = 0.14
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +3
Query: 3 IISDRYGRKSTLITSVVLEVITGIMSSFMPDFWSFTIIRXILGXS 137
I D GRK ++ S IT I F + W +T ++ I+G S
Sbjct: 144 IPDDSLGRKKLVLFSTFAMSITSISVIFSTNVWIYTFLKFIIGFS 188
>At5g17010.3 68418.m01994 sugar transporter family protein similar
to D-xylose proton-symporter [Lactobacillus brevis]
GI:2895856; contains Pfam profile PF00083: major
facilitator superfamily protein
Length = 440
Score = 30.3 bits (65), Expect = 0.18
Identities = 15/46 (32%), Positives = 26/46 (56%)
Frame = +3
Query: 6 ISDRYGRKSTLITSVVLEVITGIMSSFMPDFWSFTIIRXILGXSVG 143
I+D GR+ LI + +L ++ ++++ P + I R I G SVG
Sbjct: 115 IADVIGRRKELILAALLYLVGALVTALAPTYSVLIIGRVIYGVSVG 160
>At5g17010.2 68418.m01993 sugar transporter family protein similar
to D-xylose proton-symporter [Lactobacillus brevis]
GI:2895856; contains Pfam profile PF00083: major
facilitator superfamily protein
Length = 440
Score = 30.3 bits (65), Expect = 0.18
Identities = 15/46 (32%), Positives = 26/46 (56%)
Frame = +3
Query: 6 ISDRYGRKSTLITSVVLEVITGIMSSFMPDFWSFTIIRXILGXSVG 143
I+D GR+ LI + +L ++ ++++ P + I R I G SVG
Sbjct: 115 IADVIGRRKELILAALLYLVGALVTALAPTYSVLIIGRVIYGVSVG 160
>At5g17010.1 68418.m01992 sugar transporter family protein similar
to D-xylose proton-symporter [Lactobacillus brevis]
GI:2895856; contains Pfam profile PF00083: major
facilitator superfamily protein
Length = 503
Score = 30.3 bits (65), Expect = 0.18
Identities = 15/46 (32%), Positives = 26/46 (56%)
Frame = +3
Query: 6 ISDRYGRKSTLITSVVLEVITGIMSSFMPDFWSFTIIRXILGXSVG 143
I+D GR+ LI + +L ++ ++++ P + I R I G SVG
Sbjct: 114 IADVIGRRKELILAALLYLVGALVTALAPTYSVLIIGRVIYGVSVG 159
>At5g13740.1 68418.m01599 sugar transporter family protein contains
Pfam profile PF00083: major facilitator superfamily
protein
Length = 486
Score = 30.3 bits (65), Expect = 0.18
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +3
Query: 3 IISDRYGRKSTLITSVVLEVITGIMSSFMPDFWSFTIIRXILG 131
I++DRYGRK ++ + I + +FW R +LG
Sbjct: 100 IVADRYGRKPIILLGTISIAIFNALFGLSSNFWMAIGTRFLLG 142
>At3g43790.3 68416.m04680 transporter-related low similarity to
SP|P39843 Multidrug resistance protein 2
(Multidrug-efflux transporter 2) {Bacillus subtilis};
contains Pfam profile PF00083: major facilitator
superfamily protein
Length = 484
Score = 29.9 bits (64), Expect = 0.24
Identities = 12/42 (28%), Positives = 20/42 (47%)
Frame = +3
Query: 6 ISDRYGRKSTLITSVVLEVITGIMSSFMPDFWSFTIIRXILG 131
++DRYGRK ++ +I + FW +R +LG
Sbjct: 99 LADRYGRKPIILIGTFSVIIFNTLFGLSTSFWLAISVRFLLG 140
>At3g43790.2 68416.m04679 transporter-related low similarity to
SP|P39843 Multidrug resistance protein 2
(Multidrug-efflux transporter 2) {Bacillus subtilis};
contains Pfam profile PF00083: major facilitator
superfamily protein
Length = 484
Score = 29.9 bits (64), Expect = 0.24
Identities = 12/42 (28%), Positives = 20/42 (47%)
Frame = +3
Query: 6 ISDRYGRKSTLITSVVLEVITGIMSSFMPDFWSFTIIRXILG 131
++DRYGRK ++ +I + FW +R +LG
Sbjct: 99 LADRYGRKPIILIGTFSVIIFNTLFGLSTSFWLAISVRFLLG 140
>At3g43790.1 68416.m04678 transporter-related low similarity to
SP|P39843 Multidrug resistance protein 2
(Multidrug-efflux transporter 2) {Bacillus subtilis};
contains Pfam profile PF00083: major facilitator
superfamily protein
Length = 478
Score = 29.9 bits (64), Expect = 0.24
Identities = 12/42 (28%), Positives = 20/42 (47%)
Frame = +3
Query: 6 ISDRYGRKSTLITSVVLEVITGIMSSFMPDFWSFTIIRXILG 131
++DRYGRK ++ +I + FW +R +LG
Sbjct: 99 LADRYGRKPIILIGTFSVIIFNTLFGLSTSFWLAISVRFLLG 140
>At1g15740.1 68414.m01888 leucine-rich repeat family protein
Length = 585
Score = 29.9 bits (64), Expect = 0.24
Identities = 11/22 (50%), Positives = 19/22 (86%)
Frame = -3
Query: 91 GINDDIIPVITSRTTDVINVDF 26
G+NDD + VI+S++T +++VDF
Sbjct: 124 GVNDDWMDVISSQSTSLLSVDF 145
>At4g21480.1 68417.m03106 glucose transporter, putative similar to
glucose transporter (Sugar carrier) STP1, Arabidopsis
thaliana, SP|P23586; contains Pfam profile PF00083:
major facilitator superfamily protein
Length = 508
Score = 28.3 bits (60), Expect = 0.73
Identities = 11/46 (23%), Positives = 24/46 (52%)
Frame = +3
Query: 6 ISDRYGRKSTLITSVVLEVITGIMSSFMPDFWSFTIIRXILGXSVG 143
++ ++GRK +++ VL +++ F W + R +LG +G
Sbjct: 103 VTRQFGRKISMLLGGVLFCAGALLNGFATAVWMLIVGRLLLGFGIG 148
>At1g20840.1 68414.m02611 transporter-related low similarity to
D-xylose proton-symporter [Lactobacillus brevis]
GI:2895856; contains Pfam profile PF00083: major
facilitator superfamily protein
Length = 734
Score = 28.3 bits (60), Expect = 0.73
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +3
Query: 6 ISDRYGRKSTLITSVVLEVITGIMSSFMPDFWSFTIIRXILGXSVG 143
ISD GR+ LI S V+ + G++ + P+ + R + G G
Sbjct: 64 ISDWLGRRPMLILSSVMYFVCGLIMLWSPNVYVLCFARLLNGFGAG 109
>At1g16390.1 68414.m01960 organic cation transporter-related low
similarity to Organic cation/carnitine transporter 2
(Solute carrier family 22, member 5) (High-affinity
sodium-dependent carnitine cotransporter) from {Homo
sapiens} SP|O76082, {Rattus norvegicus} SP|O70594;
contains Pfam profile PF00083: major facilitator
superfamily protein
Length = 518
Score = 27.5 bits (58), Expect = 1.3
Identities = 9/37 (24%), Positives = 22/37 (59%)
Frame = +3
Query: 21 GRKSTLITSVVLEVITGIMSSFMPDFWSFTIIRXILG 131
GRK+ L+ S ++ ++ ++++F W + +R + G
Sbjct: 148 GRKNMLLLSCLIMSLSSMLTAFSTSIWVYAFLRFLNG 184
>At5g59250.1 68418.m07425 sugar transporter family protein similar
to D-xylose-H+ symporter from Lactobacillus brevis
GI:2895856, sugar-porter family protein 2 [Arabidopsis
thaliana] GI:14585701; contains Pfam profile PF00083:
major facilitator superfamily protein
Length = 558
Score = 27.1 bits (57), Expect = 1.7
Identities = 12/46 (26%), Positives = 24/46 (52%)
Frame = +3
Query: 6 ISDRYGRKSTLITSVVLEVITGIMSSFMPDFWSFTIIRXILGXSVG 143
++D GR+ LI + VL ++ +++ PD + R + G +G
Sbjct: 165 VADFLGRRRELIIAAVLYLLGSLITGCAPDLNILLVGRLLYGFGIG 210
>At1g11260.1 68414.m01289 glucose transporter (STP1) nearly
identical to glucose transporter GB:P23586 SP|P23586
from [Arabidopsis thaliana]
Length = 522
Score = 26.6 bits (56), Expect = 2.2
Identities = 9/46 (19%), Positives = 24/46 (52%)
Frame = +3
Query: 6 ISDRYGRKSTLITSVVLEVITGIMSSFMPDFWSFTIIRXILGXSVG 143
++ ++GR+ +++ +L +++ F W + R +LG +G
Sbjct: 103 VTRKFGRRLSMLFGGILFCAGALINGFAKHVWMLIVGRILLGFGIG 148
>At1g63910.1 68414.m07236 myb family transcription factor (MYB103)
contains Pfam profile: PF00249 myb-like DNA-binding
domain
Length = 370
Score = 26.2 bits (55), Expect = 2.9
Identities = 8/12 (66%), Positives = 10/12 (83%)
Frame = -2
Query: 164 KPHHHYTTHRXS 129
KPHHHY+ H+ S
Sbjct: 118 KPHHHYSRHQPS 129
>At1g50310.1 68414.m05640 monosaccharide transporter (STP9)
identical to monosaccharide transporter STP9 protein
[Arabidopsis thaliana] GI:15487254; contains Pfam
profile PF00083: major facilitator superfamily protein
Length = 517
Score = 26.2 bits (55), Expect = 2.9
Identities = 12/46 (26%), Positives = 24/46 (52%)
Frame = +3
Query: 6 ISDRYGRKSTLITSVVLEVITGIMSSFMPDFWSFTIIRXILGXSVG 143
++ +YGRK ++ V +I + ++F + + R +LG VG
Sbjct: 105 VTRKYGRKISMFVGGVAFLIGSLFNAFATNVAMLIVGRLLLGVGVG 150
>At2g43330.1 68415.m05388 sugar transporter family protein similar
to SP|Q96QE2 Proton myo-inositol co-transporter (Hmit)
[Homo sapiens], SP|Q01440 Membrane transporter D1
{Leishmania donovani}; contains Pfam profile PF00083:
major facilitator superfamily protein
Length = 509
Score = 25.8 bits (54), Expect = 3.9
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +3
Query: 6 ISDRYGRKSTLITSVVLEVITGIMSSFMPDFWSFTIIRXILGXSVG 143
I+D YGRK + + V+ I+ + PD + R ++G VG
Sbjct: 94 INDYYGRKKATLFADVVFAAGAIVMAAAPDPYVLISGRLLVGLGVG 139
>At5g04900.1 68418.m00515 short-chain dehydrogenase/reductase
(SDR) family protein contains INTERPRO family IPR002198
Short-chain dehydrogenase/reductase (SDR) superfamily
Length = 348
Score = 25.4 bits (53), Expect = 5.1
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -3
Query: 94 SGINDDIIPVITSRTTDVINVDFLPYLS 11
SG N P++ R++ V NV LP+LS
Sbjct: 5 SGFNVSSSPLLRLRSSSVSNVTKLPFLS 32
>At3g20460.1 68416.m02590 sugar transporter, putative similar to
ERD6 protein [Arabidopsis thaliana] GI:3123712,
sugar-porter family proteins 1 and 2 [Arabidopsis
thaliana] GI:14585699, GI:14585701; contains Pfam
profile PF00083: major facilitator superfamily protein
Length = 488
Score = 25.4 bits (53), Expect = 5.1
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = +3
Query: 6 ISDRYGRKSTLITSVVLEVITGIMSSFMPDFWSFTIIRXILGXSVG 143
++D +GR+ L S + +M +F WS I R LG + G
Sbjct: 113 LADVFGRRGALGVSNSFCMAGWLMIAFSQATWSLDIGRLFLGVAAG 158
>At3g25840.1 68416.m03219 protein kinase family protein contains
Pfam profile: PF00069 eukaryotic protein kinase domain
Length = 935
Score = 25.0 bits (52), Expect = 6.8
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = -2
Query: 155 HHYTTHRXS*NXSDNGKTPKIGHKR*HYSSNHFKN 51
HH HR S + D K K HK H+ +H ++
Sbjct: 10 HHRKHHRSSSSSDDTEKASK-RHKHRHHKHHHHRH 43
>At2g16980.2 68415.m01957 expressed protein
Length = 461
Score = 25.0 bits (52), Expect = 6.8
Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Frame = +3
Query: 6 ISDRYGRKSTLITSVVLEVITGIMSSFMPD---FWSFTIIRXI 125
+SDRYG K+ L + L V+ + + D F++F +I+ +
Sbjct: 74 LSDRYGIKAMLTLPMCLSVLPPAILGYRRDTNFFYAFYVIKTL 116
>At2g16980.1 68415.m01956 expressed protein
Length = 408
Score = 25.0 bits (52), Expect = 6.8
Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Frame = +3
Query: 6 ISDRYGRKSTLITSVVLEVITGIMSSFMPD---FWSFTIIRXI 125
+SDRYG K+ L + L V+ + + D F++F +I+ +
Sbjct: 74 LSDRYGIKAMLTLPMCLSVLPPAILGYRRDTNFFYAFYVIKTL 116
>At4g25800.1 68417.m03712 calmodulin-binding protein similar to
calmodulin-binding protein TCB60 GI:1698548 from
[Nicotiana tabacum]
Length = 601
Score = 24.6 bits (51), Expect = 9.0
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +2
Query: 23 QKVYIDYICSS*SDYWNNVIVY 88
QKVY+D + + WN V+ Y
Sbjct: 354 QKVYVDGLVKKAYENWNQVVEY 375
>At2g20780.1 68415.m02442 mannitol transporter, putative similar to
mannitol transporter [Apium graveolens var. dulce]
GI:12004316; contains Pfam profile PF00083: major
facilitator superfamily protein
Length = 526
Score = 24.6 bits (51), Expect = 9.0
Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = +3
Query: 9 SDRYGRKSTLITSVVLEVITGIMSSFMPDFWSFTIIRXILGXSVG-GIMV 155
SD GRK T+ + ++ + + P F I R + G +G G+M+
Sbjct: 116 SDSIGRKWTMALAALVFQTGAAVMAVAPSFEVLMIGRTLAGIGIGLGVMI 165
>At1g79410.1 68414.m09254 transporter-related low similarity to
organic anion transporter 3 [Rattus norvegicus]
GI:5545293; contains Pfam profile PF00083: major
facilitator superfamily protein
Length = 515
Score = 24.6 bits (51), Expect = 9.0
Identities = 10/37 (27%), Positives = 18/37 (48%)
Frame = +3
Query: 21 GRKSTLITSVVLEVITGIMSSFMPDFWSFTIIRXILG 131
GRK L S +TGI + W ++ ++ ++G
Sbjct: 145 GRKQLLFFSSFAMSLTGISIFLSSNIWIYSFLKFVIG 181
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,257,282
Number of Sequences: 28952
Number of extensions: 42551
Number of successful extensions: 159
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 12,070,560
effective HSP length: 35
effective length of database: 11,057,240
effective search space used: 210087560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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