Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8o07
         (629 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    27   2.2  
SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces po...    27   3.0  
SPAC2F7.13c |||tryptophan-tRNA ligase |Schizosaccharomyces pombe...    27   3.0  
SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr...    26   3.9  
SPBC1348.08c |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    25   9.0  
SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces p...    25   9.0  
SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces pom...    25   9.0  
SPAC977.07c |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M...    25   9.0  

>SPAC23A1.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 251

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -3

Query: 594 IACLVPYLKSFSSNVGSHTFLNTLKSILI 508
           I C++   K  S+  G +TF+N L+S LI
Sbjct: 97  IICVIGLWKGLSAMSGKNTFINGLQSYLI 125


>SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 811

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +2

Query: 464 VPKLILLQNPIKWLMIKIDFSVLRNVWDPTFEEKDFKYGTKQA 592
           VP+L+ L +PIK  +  +D S    +  P F  KD   G++ A
Sbjct: 574 VPRLMFLPDPIKVTLENLDDSYREQIEIP-FNPKDPSMGSRSA 615


>SPAC2F7.13c |||tryptophan-tRNA ligase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 395

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 9/32 (28%), Positives = 19/32 (59%)
 Frame = -2

Query: 544 PHVS*YTEIYFDHQPFNRVLKQYQFRYAFYVF 449
           PH+      +F H+ F+ +L +Y+ +  FY++
Sbjct: 55  PHLLLRRGAFFSHRDFDMILDRYEQKKPFYLY 86


>SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 703

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -3

Query: 207 LASGYNRLTYLIGTAILRPWQ*CCFFIAVSSTFYFTQ 97
           +AS Y  L   +    + PW  CC +I +   F FT+
Sbjct: 1   MASSYLSLAARLSQCWISPWSLCCLYI-LMQFFLFTK 36


>SPBC1348.08c |||glycoprotein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 416

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +2

Query: 239 GINRPVYSITSYVTNLQNSFCYPQN 313
           G+   VY  T  +++  N FCYP+N
Sbjct: 194 GLEYAVYDYT--ISSSMNEFCYPKN 216


>SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 601

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 8/23 (34%), Positives = 17/23 (73%)
 Frame = +2

Query: 167 VPIKYVRRLYPLASRWNTIKNLH 235
           VP KY ++LY + +  +T++N++
Sbjct: 467 VPYKYAKKLYSILNGGSTLRNVN 489


>SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 564

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
 Frame = -2

Query: 178 FNWNSHLAPMAIMLLFYSC--IFNILFHTINNFPFC*MIIQN 59
           ++WN  L  +A  L + SC   F   F ++ N PFC M+  +
Sbjct: 103 YDWN--LTGVAARLGYLSCGLFFVSYFFSLKNNPFCLMLFSS 142


>SPAC977.07c |||glycoprotein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 416

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +2

Query: 239 GINRPVYSITSYVTNLQNSFCYPQN 313
           G+   VY  T  +++  N FCYP+N
Sbjct: 194 GLEYAVYDYT--ISSSMNEFCYPKN 216


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,618,306
Number of Sequences: 5004
Number of extensions: 54437
Number of successful extensions: 146
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)