Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8n23
         (535 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19B12.08 |||peptidase family C54|Schizosaccharomyces pombe|c...    62   5e-11
SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom...    28   1.0  
SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch...    27   1.8  
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch...    27   1.8  
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    27   2.3  
SPBC776.02c |dis2|sds1, bws1|serine/threonine protein phosphatas...    27   2.3  
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni...    26   3.1  
SPBC36.01c |||spermidine family transporter |Schizosaccharomyces...    26   3.1  
SPBP23A10.14c |ell1||RNA polymerase II transcription elongation ...    26   4.1  
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    25   5.4  
SPAC1093.02 |||pyridoxamine 5'-phosphate oxidase |Schizosaccharo...    25   7.1  
SPAPB2B4.03 |cig2|cyc17|cyclin Cig2|Schizosaccharomyces pombe|ch...    25   9.4  
SPBC428.18 |cdt1||replication licensing factor Cdt1|Schizosaccha...    25   9.4  

>SPAC19B12.08 |||peptidase family C54|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 320

 Score = 62.1 bits (144), Expect = 5e-11
 Identities = 44/125 (35%), Positives = 61/125 (48%), Gaps = 1/125 (0%)
 Frame = +1

Query: 160 DITSIIWCTYRKGFVPIGDEGLTSDKGWGCMLRCGQMVLGVALVRVHLSVDWVWSPETRD 339
           D  S+I  TYR G    G E +TSD GWGCM+R  Q +L   L         +  PE + 
Sbjct: 47  DSFSLITITYRSGIE--GLENMTSDTGWGCMIRSTQTLLANCL--------RICYPEKQ- 95

Query: 340 PTYLKIIQRFEERKQAPYSIHQVALMGASE-GKEVGQWFGPNTIAQVLKKLTVYDKWSSL 516
               +I+  F +   AP+SIHQ   MG +      GQWFGP T    + +L+  +    L
Sbjct: 96  --LKEILALFADEPSAPFSIHQFVTMGKTLCDINPGQWFGPTTSCSCVARLSDQNPDVPL 153

Query: 517 AIHVA 531
            ++VA
Sbjct: 154 HVYVA 158


>SPBC30B4.04c |sol1||SWI/SNF complex subunit
           Sol1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 865

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = -3

Query: 341 GSLVSGDHTQSTDKCTLTRATPNTICPHRNIQPHPLSEVKPSSP 210
           GSL S   + +      + A P T+   RN  P+P +  +P+ P
Sbjct: 325 GSLHSKSPSPAFTANRFSPAAPTTVSSERNAPPYPSAPTRPTPP 368


>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 642

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = +2

Query: 47  ISCFLSKYILLF*YIPILHLVQLMCIVIVAVIWI 148
           I CFLS +I+   +  I+ +  ++  +I+A +WI
Sbjct: 258 IFCFLSSFIITGVFFFIMSICPMVISLIIAPLWI 291


>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1374

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = -1

Query: 301 SVL*QEQHLIPSVHIVTYSPILYQKSNLHHQLVQ 200
           +VL ++   +P +  +T SP   +K NL+H+L Q
Sbjct: 169 AVLSKKHFTLPRIFGMTASPFTGKKGNLYHRLYQ 202


>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
            subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
 Frame = +2

Query: 35   LFQFISCFLSKYILLF*YIPILHLVQLMCIVIVAVIWIV-LEEISHQ*YGVRTEKALYQL 211
            L  F   FL  ++LLF   P++ +  +  +  + + W+V   +I    Y +R  K   Q+
Sbjct: 1614 LNMFAGDFLLSHLLLFLQAPVILIPYIDKLHSIILFWLVPSRQIRPPIYTIRQNKLRRQI 1673

Query: 212  VMK 220
            V++
Sbjct: 1674 VLR 1676


>SPBC776.02c |dis2|sds1, bws1|serine/threonine protein phosphatase
           PP1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 327

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -2

Query: 441 NFFSFRGTHQCHLMDRIRCLFPFFKPLYDL 352
           NFF  RG H+C  ++RI   +   K  Y++
Sbjct: 116 NFFILRGNHECASINRIYGFYDECKRRYNI 145


>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
            Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2199

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +1

Query: 151  IRRDITSIIWCTYRKGFVPIGDEGLTSDKGWGCMLRCGQMVL 276
            IR  +TSI +   RK FV   DE L + +  GC++     +L
Sbjct: 1317 IRNRLTSIRFIVNRKFFVCFKDETLPNVEIEGCLIEKSNAIL 1358


>SPBC36.01c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 580

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +2

Query: 92  PILHLVQLMCIVIVAVIWIVLE 157
           PI+ LV L C  + A+I+++LE
Sbjct: 370 PIVFLVSLYCSFVYAIIYLLLE 391


>SPBP23A10.14c |ell1||RNA polymerase II transcription elongation
           factor SpELL|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 533

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -1

Query: 289 QEQHLIPSVHIVTYSPILYQKSN 221
           Q+QH IP ++   YSP+L   S+
Sbjct: 340 QQQHRIPKLNASNYSPLLSPSSH 362


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
            Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 16/46 (34%), Positives = 21/46 (45%)
 Frame = +2

Query: 104  LVQLMCIVIVAVIWIVLEEISHQ*YGVRTEKALYQLVMKV*LLIKD 241
            L + +C  I  ++W   EEI+ Q  GV T      LV K     KD
Sbjct: 1332 LCKALCNTIFPILWRPKEEINFQEAGVLTAPLKNWLVSKTFSFNKD 1377


>SPAC1093.02 |||pyridoxamine 5'-phosphate oxidase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 231

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 16/52 (30%), Positives = 23/52 (44%)
 Frame = +1

Query: 328 ETRDPTYLKIIQRFEERKQAPYSIHQVALMGASEGKEVGQWFGPNTIAQVLK 483
           E  D T+ K+I      +    S+H+ ALMG        QWF   T  + +K
Sbjct: 3   ENTDSTHEKLIFAPSRYQYEKSSLHRDALMGKDPLVLFNQWFQEATDDEGIK 54


>SPAPB2B4.03 |cig2|cyc17|cyclin Cig2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 411

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -2

Query: 78  NKIYLDKKHDMNWNKIHIYCEWNVKI 1
           N  Y+D++ ++ W    I  EW V+I
Sbjct: 154 NPKYMDQQKELTWKMREILNEWLVEI 179


>SPBC428.18 |cdt1||replication licensing factor
           Cdt1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 444

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 11/38 (28%), Positives = 23/38 (60%)
 Frame = -1

Query: 280 HLIPSVHIVTYSPILYQKSNLHHQLVQSLFCTYTILLM 167
           +L+ ++ +VT+S I+  K  L  QL++ L    +I ++
Sbjct: 404 NLLGNIQVVTFSRIVNGKPYLRSQLIEELQTKASITIL 441


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,415,436
Number of Sequences: 5004
Number of extensions: 52944
Number of successful extensions: 148
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)