Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte8n23
(535 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_03_0216 + 15495395-15495566,15495648-15495733,15495824-154958... 89 2e-18
04_04_1624 - 34849385-34849410,34849748-34851052,34852121-348522... 85 4e-17
09_04_0363 + 16957949-16958361,16958524-16958527 29 3.1
01_06_1832 + 40204513-40204722,40205200-40205562,40206038-40206553 29 3.1
09_04_0163 - 15249816-15249920,15250032-15250163,15250463-152506... 28 4.1
11_03_0126 + 10371536-10371596,10372467-10372544,10373968-103741... 27 7.2
04_03_0266 + 13648287-13649099,13649186-13649524 27 9.5
01_07_0005 + 40364385-40364732,40365299-40365448 27 9.5
>03_03_0216 +
15495395-15495566,15495648-15495733,15495824-15495874,
15496005-15496390,15496760-15496898,15497540-15497595,
15497712-15497782,15497876-15498081
Length = 388
Score = 89.4 bits (212), Expect = 2e-18
Identities = 46/123 (37%), Positives = 61/123 (49%), Gaps = 1/123 (0%)
Frame = +1
Query: 124 SDCCCNLDRIRRDITSIIWCTYRKGFVPIGDEGLTSDKGWGCMLRCGQMVLGVALVRVHL 303
SDC D +S IW TYRKGF I D TSD WGCM+R QM++ AL+ HL
Sbjct: 34 SDCESGNAAFLEDFSSRIWITYRKGFDAISDSKYTSDVNWGCMVRSSQMLVAQALIFHHL 93
Query: 304 SVDW-VWSPETRDPTYLKIIQRFEERKQAPYSIHQVALMGASEGKEVGQWFGPNTIAQVL 480
W S + P Y+ I+ F + + +SIH + G S G G W GP + +
Sbjct: 94 GRSWRKPSQKPYSPEYIGILHMFGDSEACAFSIHNLLQAGKSYGLAAGSWVGPYAMCRAW 153
Query: 481 KKL 489
+ L
Sbjct: 154 QTL 156
>04_04_1624 -
34849385-34849410,34849748-34851052,34852121-34852294,
34852386-34852456,34852563-34852618,34853047-34853185,
34853310-34853695,34853801-34853851,34853936-34854021,
34854112-34854553,34856241-34856315,34856457-34856593,
34856679-34856838,34856917-34857012,34857093-34857247,
34857900-34858032
Length = 1163
Score = 84.6 bits (200), Expect = 4e-17
Identities = 42/111 (37%), Positives = 58/111 (52%), Gaps = 1/111 (0%)
Frame = +1
Query: 160 DITSIIWCTYRKGFVPIGDEGLTSDKGWGCMLRCGQMVLGVALVRVHLSVDWVWSPE-TR 336
D +S IW TYR+GF I D TSD WGCM+R QM++ AL+ HL W E
Sbjct: 388 DFSSRIWITYRRGFDAISDSKYTSDVNWGCMVRSSQMLVAQALIFHHLGRSWRRPLEKPY 447
Query: 337 DPTYLKIIQRFEERKQAPYSIHQVALMGASEGKEVGQWFGPNTIAQVLKKL 489
+P Y+ I+ F + + +SIH + G S G G W GP + + + L
Sbjct: 448 NPEYIGILHMFGDSEACAFSIHNLLQAGNSYGLAAGSWVGPYAMCRAWQTL 498
>09_04_0363 + 16957949-16958361,16958524-16958527
Length = 138
Score = 28.7 bits (61), Expect = 3.1
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = -3
Query: 323 DHTQSTDKCTLTRATPNTICPHRNIQPHPLSEVK 222
DH ++T T T +TPN I P P S +K
Sbjct: 85 DHLKATSPATATASTPNIIVPMTPAATAPTSSLK 118
>01_06_1832 + 40204513-40204722,40205200-40205562,40206038-40206553
Length = 362
Score = 28.7 bits (61), Expect = 3.1
Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Frame = +1
Query: 109 AINVHSDCCCNLDRIRRDITSII--WCTY 189
A+ +H+DCC LD D+T I W Y
Sbjct: 301 AVTMHADCCVGLDTKVHDLTDIAADWKNY 329
>09_04_0163 -
15249816-15249920,15250032-15250163,15250463-15250629,
15251259-15251448,15252530-15252661,15253275-15253382,
15253513-15253608,15253702-15253809,15253917-15254089,
15255026-15255401,15255887-15256030,15256125-15256799,
15256917-15256982,15257082-15257249
Length = 879
Score = 28.3 bits (60), Expect = 4.1
Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 5/68 (7%)
Frame = -3
Query: 302 KCTLTRATPNTICPHRNIQP-----HPLSEVKPSSPIGTKPFLYVHHIIDVISLLIRSKL 138
+C + A +CP+ + P PLS++K SS F+Y + + SK
Sbjct: 228 RCFMVVALSTFLCPNSDTHPSPKYLEPLSDIKSSSKWNWSKFVYEWLMTYIAKFQKESKS 287
Query: 137 QQQSLCTL 114
++Q+ TL
Sbjct: 288 KEQTSKTL 295
>11_03_0126 +
10371536-10371596,10372467-10372544,10373968-10374127,
10374286-10374610,10374708-10374860,10374985-10375236,
10375356-10375445,10375543-10375621,10375712-10375818,
10375921-10376048,10376329-10376419
Length = 507
Score = 27.5 bits (58), Expect = 7.2
Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Frame = +1
Query: 163 ITSIIWCTYRKGFVPIGDEGLTSDKGWGCMLRCGQMVLGVALVRVHLSVD-WVWSPETR 336
IT++I +RK + G T GW M+ + L L L D W W+ E R
Sbjct: 381 ITTVIPGGFRKALTDVQVNGYTIPSGWLVMISPMGVHLNPKLFEDPLKFDPWRWTEEKR 439
>04_03_0266 + 13648287-13649099,13649186-13649524
Length = 383
Score = 27.1 bits (57), Expect = 9.5
Identities = 11/38 (28%), Positives = 17/38 (44%)
Frame = -3
Query: 326 GDHTQSTDKCTLTRATPNTICPHRNIQPHPLSEVKPSS 213
GD + T TR P P + HP+ +++ SS
Sbjct: 330 GDDAEKTRDRETTRKLPKQAIPKKKTSSHPMPKIRKSS 367
>01_07_0005 + 40364385-40364732,40365299-40365448
Length = 165
Score = 27.1 bits (57), Expect = 9.5
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = -3
Query: 521 IANELHLSYTVSFFKT*A-IVLGPNHWPTSFPSEAPI 414
+ +L L T+ FK + + P WP S SE+PI
Sbjct: 117 VVTDLSLIITIKIFKRSVDLRVSPLQWPQSLDSESPI 153
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,555,250
Number of Sequences: 37544
Number of extensions: 309444
Number of successful extensions: 729
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 718
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 727
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1190246000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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