Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8n23
         (535 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   4.5  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   6.0  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    21   7.9  
AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    21   7.9  

>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +2

Query: 86  YIPILHLVQLMCIVIVAVIWIVLEE 160
           YIP+  ++Q+   +  A   IVLEE
Sbjct: 212 YIPLFVMIQVYYKIFCAARRIVLEE 236


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -1

Query: 442 QLLFLQRHPSMPLDG*NKVLVSFLQTFV*SLNKLDPL 332
           Q L LQR+  + + G     ++ L+TF  S N LD L
Sbjct: 240 QELHLQRNAIVEIAGDALTGLTVLRTFNASYNSLDSL 276


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -1

Query: 286 EQHLIPSVHIVTYSPILYQKSNLHHQLVQ 200
           E+H + +VH V  +P   Q  N+  +L+Q
Sbjct: 450 EKHELANVHPVGINPGKMQLKNIIKKLLQ 478


>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -1

Query: 142 NYSNNHYAH*LHQM*YGNI 86
           NYSNN+Y +  ++  Y NI
Sbjct: 312 NYSNNYYNNNNYKKLYYNI 330


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,854
Number of Sequences: 438
Number of extensions: 3993
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15090993
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)