Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8n20
         (605 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_02_0101 + 11127762-11128146,11128604-11128782,11129285-111293...    29   2.2  
04_03_0387 - 15251816-15251905,15251999-15252069,15252098-152523...    28   6.6  
09_02_0527 + 10234622-10235773                                         27   8.7  
07_03_1781 + 29468919-29468951,29469057-29469184,29469349-294694...    27   8.7  
05_05_0233 + 23496405-23496932,23497346-23497621,23497747-23497938     27   8.7  

>01_02_0101 +
           11127762-11128146,11128604-11128782,11129285-11129341,
           11129421-11129484,11130374-11130417,11130811-11130861
          Length = 259

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +2

Query: 167 GNGSKATLTWWTLRKIGRCC 226
           G+G +  LTW  L  IGRCC
Sbjct: 126 GSGGRQLLTWIVLAIIGRCC 145


>04_03_0387 -
           15251816-15251905,15251999-15252069,15252098-15252323,
           15252344-15252496,15252570-15252656,15252745-15252948,
           15253038-15253159,15253354-15253507,15254329-15254434,
           15254507-15254617,15256468-15256622
          Length = 492

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = +1

Query: 97  LPHKLRYLENMLNSEVVAKATKIRQRIEGNPNMVDTEKNWPMLLAKYQSKDS 252
           L  K R  +  L  +       + + ++  PN VD E  WP L++ + SKDS
Sbjct: 233 LDGKWRQYKGKLKGKYYKPNLPMERVLQTVPNTVD-ESRWPTLVSYWYSKDS 283


>09_02_0527 + 10234622-10235773
          Length = 383

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +1

Query: 223 LLAKYQSKDSLLNEMPFNIPGNKFNKH 303
           L A    KDS L ++ F++ G +FN H
Sbjct: 174 LAAMSNKKDSTLTDVCFDVDGERFNAH 200


>07_03_1781 +
           29468919-29468951,29469057-29469184,29469349-29469433,
           29469771-29469824,29470072-29470163,29470280-29470383,
           29470811-29470886,29471231-29471678,29471874-29471916,
           29471977-29472209,29472302-29472505,29472595-29472693,
           29472789-29472861,29473373-29473500,29473614-29473836,
           29473992-29474215,29474296-29474423,29475053-29475167,
           29475603-29475658,29475795-29475888,29475966-29476152,
           29476229-29476309,29476384-29476484,29476567-29476629,
           29476800-29476907
          Length = 1059

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +1

Query: 175 IEGNPNMVDTEKNWPMLLAKYQSKDSLLNEMPFNIP 282
           +EG   M   ++N  + + KY   D  L +MP+N+P
Sbjct: 125 VEGTFLMYLGDENGLLSVLKYDVDDGKLQKMPYNVP 160


>05_05_0233 + 23496405-23496932,23497346-23497621,23497747-23497938
          Length = 331

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -2

Query: 364 FYCWLNFLNHRC 329
           FYCWL+F +H C
Sbjct: 26  FYCWLSFCDHCC 37


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,041,392
Number of Sequences: 37544
Number of extensions: 199113
Number of successful extensions: 352
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 350
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 352
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1442939384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)