Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8n20
         (605 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT025131-1|ABE73302.1|  314|Drosophila melanogaster IP07320p pro...    29   3.7  
AE014296-1201|AAN12075.1|  177|Drosophila melanogaster CG32390-P...    29   3.7  
AY061381-1|AAL28929.1| 1071|Drosophila melanogaster LD30416p pro...    29   4.9  
AE014134-3335|AAF53958.1|  982|Drosophila melanogaster CG12050-P...    29   4.9  
AY071301-1|AAL48923.1|  783|Drosophila melanogaster RE32990p pro...    28   8.6  
AF197059-1|AAF62399.1|  783|Drosophila melanogaster retinoblasto...    28   8.6  
AF195899-1|AAF66827.1|  782|Drosophila melanogaster RB-related p...    28   8.6  
AE014297-2127|AAF55258.1|  783|Drosophila melanogaster CG5083-PA...    28   8.6  

>BT025131-1|ABE73302.1|  314|Drosophila melanogaster IP07320p
           protein.
          Length = 314

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 18/44 (40%), Positives = 24/44 (54%)
 Frame = +1

Query: 97  LPHKLRYLENMLNSEVVAKATKIRQRIEGNPNMVDTEKNWPMLL 228
           L H  R L+N L +E+ A   ++RQ IE    +V T  NW  LL
Sbjct: 259 LEHVSRVLDNALPTELHAPLQQLRQDIE----VVRTNANWTQLL 298


>AE014296-1201|AAN12075.1|  177|Drosophila melanogaster CG32390-PA
           protein.
          Length = 177

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 18/44 (40%), Positives = 24/44 (54%)
 Frame = +1

Query: 97  LPHKLRYLENMLNSEVVAKATKIRQRIEGNPNMVDTEKNWPMLL 228
           L H  R L+N L +E+ A   ++RQ IE    +V T  NW  LL
Sbjct: 122 LEHVSRVLDNALPTELHAPLQQLRQDIE----VVRTNANWTQLL 161


>AY061381-1|AAL28929.1| 1071|Drosophila melanogaster LD30416p
           protein.
          Length = 1071

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = +1

Query: 73  YNITCKIVLPHKLRYLENMLNSEVVAKATKIRQR 174
           + + C + L H+ R  +++    V+ +ATK+R R
Sbjct: 645 FGVECSVPLAHRQRLFQHLQQRAVIPQATKLRLR 678


>AE014134-3335|AAF53958.1|  982|Drosophila melanogaster CG12050-PA
           protein.
          Length = 982

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = +1

Query: 73  YNITCKIVLPHKLRYLENMLNSEVVAKATKIRQR 174
           + + C + L H+ R  +++    V+ +ATK+R R
Sbjct: 645 FGVECSVPLAHRQRLFQHLQQRAVIPQATKLRLR 678


>AY071301-1|AAL48923.1|  783|Drosophila melanogaster RE32990p
           protein.
          Length = 783

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = +1

Query: 130 LNSEVVAKATKIRQRIEGNPNMVDTEKNWPMLLAKYQSKDSLLNEMP 270
           +N+  V ++  IR+   G P   DTE   P+LL KY   ++L   +P
Sbjct: 212 VNALEVPRSVVIRREFSGVPKNWDTEDFNPILLNKYSVLEALGELIP 258


>AF197059-1|AAF62399.1|  783|Drosophila melanogaster retinoblastoma
           protein homologRBF2 protein.
          Length = 783

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = +1

Query: 130 LNSEVVAKATKIRQRIEGNPNMVDTEKNWPMLLAKYQSKDSLLNEMP 270
           +N+  V ++  IR+   G P   DTE   P+LL KY   ++L   +P
Sbjct: 212 VNALEVPRSVVIRREFSGVPKNWDTEDFNPILLNKYSVLEALGELIP 258


>AF195899-1|AAF66827.1|  782|Drosophila melanogaster RB-related
           protein RBF2 protein.
          Length = 782

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = +1

Query: 130 LNSEVVAKATKIRQRIEGNPNMVDTEKNWPMLLAKYQSKDSLLNEMP 270
           +N+  V ++  IR+   G P   DTE   P+LL KY   ++L   +P
Sbjct: 212 VNALEVPRSVVIRREFSGVPKNWDTEDFNPILLNKYSVLEALGELIP 258


>AE014297-2127|AAF55258.1|  783|Drosophila melanogaster CG5083-PA
           protein.
          Length = 783

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = +1

Query: 130 LNSEVVAKATKIRQRIEGNPNMVDTEKNWPMLLAKYQSKDSLLNEMP 270
           +N+  V ++  IR+   G P   DTE   P+LL KY   ++L   +P
Sbjct: 212 VNALEVPRSVVIRREFSGVPKNWDTEDFNPILLNKYSVLEALGELIP 258


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,556,552
Number of Sequences: 53049
Number of extensions: 379031
Number of successful extensions: 759
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 752
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 759
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2482967880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)