Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8n20
         (605 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z77133-2|CAB00864.2|  664|Caenorhabditis elegans Hypothetical pr...    29   2.6  
U55854-1|AAA98010.2|  418|Caenorhabditis elegans Hypothetical pr...    27   7.9  

>Z77133-2|CAB00864.2|  664|Caenorhabditis elegans Hypothetical
           protein K03A11.4 protein.
          Length = 664

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
 Frame = +1

Query: 139 EVVAKATKIRQRIEGNPNMVDTEKNWPMLLA---KYQSKDSLLNEMPFNIPGNKFNKHNR 309
           +V+ K TKI + +  N   + +  +    +    KYQS +S    MP  IPG K + + R
Sbjct: 452 KVLRKTTKILEIMTENAKQIQSHYDTRATILDIMKYQSANSFSETMPREIPGEKGSSYIR 511


>U55854-1|AAA98010.2|  418|Caenorhabditis elegans Hypothetical
           protein C04G6.4 protein.
          Length = 418

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = +1

Query: 61  LSFSYNITCKIVLPHKLRYLENMLN-SEVVAKATKIRQRIEGNPNMVDTE 207
           +S  Y  TCKIVL H+ +Y + +    E+ +   ++ QR   +  + D E
Sbjct: 316 ISGRYYSTCKIVLHHESKYFDAISQLLEIPSTLVEVIQRAAKSEGLPDDE 365


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,730,718
Number of Sequences: 27780
Number of extensions: 217915
Number of successful extensions: 524
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 515
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 524
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1300523034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)