Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8n18
         (450 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18G6.09c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   4.1  
SPACUNK4.09 |||conserved protein|Schizosaccharomyces pombe|chr 1...    25   5.4  
SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 compon...    25   7.1  
SPBP23A10.15c |qcr1|mas1|mitochondrial processing peptidase comp...    24   9.4  

>SPAC18G6.09c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 312

 Score = 25.4 bits (53), Expect = 4.1
 Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 6/49 (12%)
 Frame = -1

Query: 384 ASWQECASCGTATQTVP-QF-DGSSAPSTPGGIPLG--ICP--DDEPSL 256
           A WQ     G+    +P QF   SS PSTP  + +G   CP   ++PSL
Sbjct: 186 AEWQP--PTGSVNSNMPFQFHQSSSVPSTPSEVAMGHNFCPMSRNDPSL 232


>SPACUNK4.09 |||conserved protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 339

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +3

Query: 285 PTEYLLECWGQKNHRIEELFVL 350
           P+E + +CW Q   + EELFV+
Sbjct: 44  PSEKISKCWYQLPAKQEELFVV 65


>SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 component
           of oxoglutarate dehydrogenase complex
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 24.6 bits (51), Expect = 7.1
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -3

Query: 406 SCTTPVSRLMAGMCFMRYSNT 344
           S T PVS+ MA + + RY++T
Sbjct: 23  SVTAPVSKSMANVLWARYAST 43


>SPBP23A10.15c |qcr1|mas1|mitochondrial processing peptidase complex
           beta subunit Qcr1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 457

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 13/45 (28%), Positives = 19/45 (42%)
 Frame = -2

Query: 392 G*PPHGRNVLHAVQQHKQFLNSMVLLPPALQEVFRWGYALMTSLL 258
           G  PH  + L  + Q  Q  NS +    +  +   WG  L+T  L
Sbjct: 296 GASPHLSSRLSTIVQQHQLANSFMSFSTSYSDTGLWGIYLVTENL 340


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,072,810
Number of Sequences: 5004
Number of extensions: 43993
Number of successful extensions: 98
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)