Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8n18
         (450 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0842 + 21754800-21754932,21755513-21756267                       28   3.0  
07_01_0010 + 72162-74303,74470-74545,75971-76043,76496-76540,779...    27   5.3  
07_03_1321 - 25794146-25794904                                         27   7.0  
05_05_0129 - 22594527-22594922                                         27   7.0  
03_06_0499 - 34354040-34354528                                         27   7.0  
01_05_0106 + 18160018-18160243,18160423-18160470,18160816-181609...    27   7.0  
10_06_0016 - 9659580-9659771,9659906-9660011,9661567-9661853           27   9.2  
09_02_0307 + 7131031-7131326,7131414-7131560,7132579-7132711,713...    27   9.2  
07_01_0484 - 3643294-3643478,3644282-3644555,3644646-3645018,364...    27   9.2  

>08_02_0842 + 21754800-21754932,21755513-21756267
          Length = 295

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
 Frame = -1

Query: 414 GTSRARR-RLAASWQECASCGTATQTVPQFDGSSAPSTPGGIPLGICPDDEPS 259
           G++R RR R  A+W     CG         DG   P+  GG+    C DD  S
Sbjct: 180 GSARWRRGRAGAAW-----CGWQEDGATMGDGGDGPARCGGVAWETCGDDGDS 227


>07_01_0010 + 72162-74303,74470-74545,75971-76043,76496-76540,
            77916-78116,78463-78541,78637-78678,78788-78847,
            79087-80484,80777-80902,81037-81300
          Length = 1501

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
 Frame = -1

Query: 363  SCGTATQT---VPQFDGSSAPSTPGGIPLGICPDDE 265
            SC T  Q    VP+ D SS P+ PGG    +   DE
Sbjct: 1190 SCATQIQKDDHVPRLDESSVPNFPGGQDFSLISIDE 1225


>07_03_1321 - 25794146-25794904
          Length = 252

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 15/34 (44%), Positives = 16/34 (47%)
 Frame = -1

Query: 354 TATQTVPQFDGSSAPSTPGGIPLGICPDDEPSLL 253
           TAT T    D  S PS+P   P     DD PS L
Sbjct: 4   TATATTTAGDSHSLPSSPATSPTAFL-DDHPSFL 36


>05_05_0129 - 22594527-22594922
          Length = 131

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = -1

Query: 414 GTSRARRRLAASWQECASCGTATQTVPQFDGSSAP 310
           G  R R R  A W+  A   +A   VPQ    +AP
Sbjct: 68  GRRRGRERAMAGWRAAAEEASAAAGVPQIRPPAAP 102


>03_06_0499 - 34354040-34354528
          Length = 162

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -1

Query: 408 SRARRRLAASWQECASCGTATQTVP 334
           S A +  AA+W  C +CG  T+++P
Sbjct: 87  SLAAKGAAAAWPCCDNCGGCTKSIP 111


>01_05_0106 +
           18160018-18160243,18160423-18160470,18160816-18160974,
           18162056-18162219,18162778-18162885,18163695-18163865,
           18163945-18164478,18164574-18164648,18164724-18164852,
           18164975-18165049,18165129-18165338,18165529-18165681,
           18165763-18165986,18166305-18166422,18166518-18166656,
           18166745-18166946,18166981-18167149,18167190-18167267,
           18167268-18167408,18167717-18167819,18169024-18169324,
           18169450-18169518,18169602-18169626,18170946-18170975
          Length = 1216

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +3

Query: 288 TEYLLECWGQKNHRIEELFVLL 353
           TE L +CW Q NH+ EE  +L+
Sbjct: 554 TELLPQCWEQINHQYEERRLLV 575


>10_06_0016 - 9659580-9659771,9659906-9660011,9661567-9661853
          Length = 194

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 20/58 (34%), Positives = 25/58 (43%), Gaps = 3/58 (5%)
 Frame = -1

Query: 450 VRSPPPACVGVYGTSRA-RRRLAASWQECASCGTATQT--VPQFDGSSAPSTPGGIPL 286
           V +PPPA + V   + A    + A     A  G   Q   V   D   AP TPGG+ L
Sbjct: 11  VEAPPPAALAVAAAAVAVEAGVGAGGGAAAHGGENAQPRGVRMKDPPGAPGTPGGLGL 68


>09_02_0307 +
           7131031-7131326,7131414-7131560,7132579-7132711,
           7133115-7133207,7133421-7133717
          Length = 321

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 18/37 (48%), Positives = 20/37 (54%), Gaps = 8/37 (21%)
 Frame = -1

Query: 450 VRSP-PPACVGVYGTSRARRR-------LAASWQECA 364
           +RSP PPA V     SR RRR       + ASWQE A
Sbjct: 9   LRSPAPPAAVAAGSLSRRRRRRRAGLAPVRASWQELA 45


>07_01_0484 -
           3643294-3643478,3644282-3644555,3644646-3645018,
           3645177-3645233,3646034-3646458
          Length = 437

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -1

Query: 444 SPPPACVGVYGTSRARRRLAAS 379
           SPPPA  GV  T+   R +AAS
Sbjct: 9   SPPPAAAGVGATAAQSRDMAAS 30


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,512,361
Number of Sequences: 37544
Number of extensions: 290613
Number of successful extensions: 836
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 818
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 836
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 871620292
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)