Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8n18
         (450 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83114-5|CAB05550.2|  485|Caenorhabditis elegans Hypothetical pr...    42   3e-04
AF348167-1|AAK37545.1|  485|Caenorhabditis elegans Pelle IRAK-li...    42   3e-04
U40800-4|AAO91742.1|  763|Caenorhabditis elegans Hypothetical pr...    31   0.39 
U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical p...    29   1.6  
U97191-1|AAB52432.1|  805|Caenorhabditis elegans Nuclear pore co...    29   2.1  
AL021171-3|CAB54258.1|  749|Caenorhabditis elegans Hypothetical ...    28   3.6  
AL021171-2|CAA15957.1|  747|Caenorhabditis elegans Hypothetical ...    28   3.6  
Z92803-4|CAB54267.2|  303|Caenorhabditis elegans Hypothetical pr...    27   4.8  
Z92803-3|CAB07243.2|  301|Caenorhabditis elegans Hypothetical pr...    27   4.8  
Z81017-4|CAB02668.1|  181|Caenorhabditis elegans Hypothetical pr...    27   4.8  
AF123573-1|AAD21196.1|  301|Caenorhabditis elegans chromo-domain...    27   4.8  
AF106582-1|AAC78217.3| 1424|Caenorhabditis elegans Hypothetical ...    27   4.8  
AC006770-2|AAF60593.1| 1145|Caenorhabditis elegans Hypothetical ...    27   8.3  

>Z83114-5|CAB05550.2|  485|Caenorhabditis elegans Hypothetical
           protein K09B11.1 protein.
          Length = 485

 Score = 41.5 bits (93), Expect = 3e-04
 Identities = 19/51 (37%), Positives = 28/51 (54%)
 Frame = +3

Query: 282 SPTEYLLECWGQKNHRIEELFVLLYRMKHIPAMRRLTGVVHERFHRLLHKL 434
           SP+E LL  W  K +    L+ L  + K I  MR +   VHE++H L +K+
Sbjct: 61  SPSELLLRIWSSKGYSTTHLYQLFAKTKLIRLMRMMRSQVHEKYHYLENKV 111


>AF348167-1|AAK37545.1|  485|Caenorhabditis elegans Pelle IRAK-like
           kinase 1 protein.
          Length = 485

 Score = 41.5 bits (93), Expect = 3e-04
 Identities = 19/51 (37%), Positives = 28/51 (54%)
 Frame = +3

Query: 282 SPTEYLLECWGQKNHRIEELFVLLYRMKHIPAMRRLTGVVHERFHRLLHKL 434
           SP+E LL  W  K +    L+ L  + K I  MR +   VHE++H L +K+
Sbjct: 61  SPSELLLRIWSSKGYSTTHLYQLFAKTKLIRLMRMMRSQVHEKYHYLENKV 111


>U40800-4|AAO91742.1|  763|Caenorhabditis elegans Hypothetical
           protein D2096.12 protein.
          Length = 763

 Score = 31.1 bits (67), Expect = 0.39
 Identities = 13/19 (68%), Positives = 14/19 (73%)
 Frame = -1

Query: 351 ATQTVPQFDGSSAPSTPGG 295
           AT+T P FD SS PSTP G
Sbjct: 201 ATRTTPPFDTSSRPSTPSG 219


>U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical
            protein T19D12.1 protein.
          Length = 1844

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
 Frame = -1

Query: 417  YGTSRARRRLAASWQECASCGTAT----QTVPQFDGSSAPSTP 301
            +GTS  +   ++S Q  AS G +T     T+PQ   SS+P +P
Sbjct: 883  FGTSTTQGLTSSSAQSTASTGVSTVASSTTIPQGSSSSSPQSP 925


>U97191-1|AAB52432.1|  805|Caenorhabditis elegans Nuclear pore
           complex protein protein11 protein.
          Length = 805

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 16/51 (31%), Positives = 22/51 (43%)
 Frame = -1

Query: 444 SPPPACVGVYGTSRARRRLAASWQECASCGTATQTVPQFDGSSAPSTPGGI 292
           +P PA  G++G S A     AS     S   +        G+SAPS   G+
Sbjct: 79  APAPASAGIFGNSGAAAPAPASTSIFGSSANSAAPATVTFGASAPSAGAGM 129


>AL021171-3|CAB54258.1|  749|Caenorhabditis elegans Hypothetical
           protein H04D03.2b protein.
          Length = 749

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -1

Query: 330 FDGSSAPSTPGGIPLGICPDDEPSLLFP 247
           FD +S    P  I +   PDD+ SLLFP
Sbjct: 719 FDDNSISPPPCPIVVDTVPDDDDSLLFP 746


>AL021171-2|CAA15957.1|  747|Caenorhabditis elegans Hypothetical
           protein H04D03.2a protein.
          Length = 747

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -1

Query: 330 FDGSSAPSTPGGIPLGICPDDEPSLLFP 247
           FD +S    P  I +   PDD+ SLLFP
Sbjct: 717 FDDNSISPPPCPIVVDTVPDDDDSLLFP 744


>Z92803-4|CAB54267.2|  303|Caenorhabditis elegans Hypothetical
           protein K01G5.2c protein.
          Length = 303

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -1

Query: 330 FDGSSAPSTPGGIPLGICPDDEPSLLFP 247
           FD +S    P  I +   PDD+ SLLFP
Sbjct: 273 FDDNSNSPPPCPIVVDTVPDDDDSLLFP 300


>Z92803-3|CAB07243.2|  301|Caenorhabditis elegans Hypothetical
           protein K01G5.2b protein.
          Length = 301

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -1

Query: 330 FDGSSAPSTPGGIPLGICPDDEPSLLFP 247
           FD +S    P  I +   PDD+ SLLFP
Sbjct: 271 FDDNSNSPPPCPIVVDTVPDDDDSLLFP 298


>Z81017-4|CAB02668.1|  181|Caenorhabditis elegans Hypothetical
           protein F58A3.3 protein.
          Length = 181

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = -2

Query: 386 PPHGRNVLHAVQQHKQFLNSMVLLPPALQEVFRWG 282
           PP    + H  Q+  + L  + L PP +Q V R G
Sbjct: 35  PPETEFIYHEEQEEDEELQELQLPPPPMQRVSRMG 69


>AF123573-1|AAD21196.1|  301|Caenorhabditis elegans chromo-domain
           protein protein.
          Length = 301

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -1

Query: 330 FDGSSAPSTPGGIPLGICPDDEPSLLFP 247
           FD +S    P  I +   PDD+ SLLFP
Sbjct: 271 FDDNSNSPPPCPIVVDTVPDDDDSLLFP 298


>AF106582-1|AAC78217.3| 1424|Caenorhabditis elegans Hypothetical
            protein W05F2.7 protein.
          Length = 1424

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -1

Query: 330  FDGSSAPSTPGGIPLGICPDDEPSLLFP 247
            FD +S    P  I +   PDD+ SLLFP
Sbjct: 1394 FDDNSNSPPPCPIVVDTVPDDDDSLLFP 1421


>AC006770-2|AAF60593.1| 1145|Caenorhabditis elegans Hypothetical
            protein Y46B2A.3 protein.
          Length = 1145

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 23/62 (37%), Positives = 29/62 (46%), Gaps = 9/62 (14%)
 Frame = -1

Query: 414  GTSR--ARRRLAASWQECASCGTATQTV-------PQFDGSSAPSTPGGIPLGICPDDEP 262
            GTSR  A+R  AA W   A+ GT + T        PQ DG + P     + L   P D+P
Sbjct: 935  GTSRGFAQRPTAAGWTNGAN-GTTSGTSRGFAHDQPQLDGRTEPMVLLVVLLEDSPSDQP 993

Query: 261  SL 256
             L
Sbjct: 994  QL 995


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,591,372
Number of Sequences: 27780
Number of extensions: 256321
Number of successful extensions: 659
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 615
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 659
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 788595652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)