Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8n16
         (669 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0657 + 25938382-25938443,25938511-25938718,25939222-259392...    31   1.1  
11_06_0076 - 19830482-19831258,19837352-19837613,19838073-19838485     29   3.3  
06_03_0911 + 25889333-25889597,25891464-25892038,25892201-258925...    29   3.3  
11_06_0289 - 21969248-21973516                                         28   5.9  
11_06_0185 + 21018045-21022307                                         28   5.9  
11_06_0078 - 19854185-19856170                                         28   7.7  
03_03_0100 + 14411807-14412100                                         28   7.7  

>11_06_0657 +
           25938382-25938443,25938511-25938718,25939222-25939268,
           25939473-25939805,25940529-25940613,25940689-25940884,
           25941012-25941182,25941261-25941318,25941429-25941657,
           25942296-25943183
          Length = 758

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 18/59 (30%), Positives = 27/59 (45%)
 Frame = +2

Query: 407 TQERTEKQLKRSRQSTGIITGLRGTLSMDETPTHSLLAICENETTKYPTYCSSQHAIEF 583
           T+E    Q   S  ++     L+G+ SM  +P  + L + EN T +     S QHA  F
Sbjct: 276 TEEMNVHQEHESFHTSNGNCYLKGSCSMQPSPAPANLPVSENHTEQIDIQLSKQHASRF 334


>11_06_0076 - 19830482-19831258,19837352-19837613,19838073-19838485
          Length = 483

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 15/49 (30%), Positives = 28/49 (57%)
 Frame = -3

Query: 322 AIKRPIKLKVSQDYYEKCGVYASQSHSEVIKFWIYR*IEWTIVLEGEAI 176
           A+KR I   + +++ E+  +++  +H  V+KF  Y   E T++L  E I
Sbjct: 63  AVKRYIHTDLRKEFMEEVSIHSKINHKNVVKFIGYSTGENTLMLVTEFI 111


>06_03_0911 +
           25889333-25889597,25891464-25892038,25892201-25892580,
           25892667-25892753,25892812-25893181,25893352-25893762,
           25893845-25893904,25894013-25894219
          Length = 784

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
 Frame = -1

Query: 531 FSQMASKECVG--VSSIDKVPLNPVIIPVLWRLLFSCFSVLSCVDTNL 394
           F   A   C    V+SI    +N    P+L+ LL S   +++C+ T L
Sbjct: 301 FGSYAESSCAALVVASISSFGINHEFTPMLYPLLISSVGIIACLITTL 348


>11_06_0289 - 21969248-21973516
          Length = 1422

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 9/13 (69%), Positives = 12/13 (92%)
 Frame = -3

Query: 289 QDYYEKCGVYASQ 251
           QDYY+KCG+Y S+
Sbjct: 306 QDYYKKCGIYRSK 318


>11_06_0185 + 21018045-21022307
          Length = 1420

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 9/13 (69%), Positives = 12/13 (92%)
 Frame = -3

Query: 289 QDYYEKCGVYASQ 251
           QDYY+KCG+Y S+
Sbjct: 306 QDYYKKCGIYRSK 318


>11_06_0078 - 19854185-19856170
          Length = 661

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 14/49 (28%), Positives = 28/49 (57%)
 Frame = -3

Query: 322 AIKRPIKLKVSQDYYEKCGVYASQSHSEVIKFWIYR*IEWTIVLEGEAI 176
           A+KR I+  + +++ E+  ++A  SH  ++K   Y   E T+++  E I
Sbjct: 50  AVKRYIRGDLREEFMEEVRIHAQMSHKNIVKLIGYCIGENTLMMVTEFI 98


>03_03_0100 + 14411807-14412100
          Length = 97

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +1

Query: 463 HRIKRNFVDG*DSDTFFAGH 522
           HR +R+F  G D D FFA H
Sbjct: 76  HRQRRDFYSGPDVDAFFAAH 95


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,975,627
Number of Sequences: 37544
Number of extensions: 341349
Number of successful extensions: 880
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 852
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 879
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)