Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8n16
         (669 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40029-1|AAA81123.3|  360|Caenorhabditis elegans Serpentine rece...    33   0.18 
AC006774-5|AAF60618.1|  363|Caenorhabditis elegans Hypothetical ...    31   0.56 
Z93778-7|CAB07847.1|  800|Caenorhabditis elegans Hypothetical pr...    30   1.7  
Z81532-9|CAB04328.1|  800|Caenorhabditis elegans Hypothetical pr...    30   1.7  
U73476-1|AAB41492.1|  800|Caenorhabditis elegans cyclic nucleoti...    30   1.7  
Z70781-2|CAA94832.1|  396|Caenorhabditis elegans Hypothetical pr...    29   3.0  
Z49867-1|CAA90027.1|  312|Caenorhabditis elegans Hypothetical pr...    29   3.0  
AJ131742-1|CAA10498.1|  590|Caenorhabditis elegans protein ( Cae...    28   5.2  
AF098989-4|AAK18956.2|  590|Caenorhabditis elegans Dystrobrevin ...    28   5.2  
AF067942-6|AAG45579.1|  345|Caenorhabditis elegans Hypothetical ...    28   5.2  
U97189-4|AAC48167.3| 2322|Caenorhabditis elegans Suppressor with...    28   6.9  
U97189-3|AAT68901.1| 2019|Caenorhabditis elegans Suppressor with...    28   6.9  
U55364-14|AAA97979.1|  210|Caenorhabditis elegans Hypothetical p...    28   6.9  
AF149821-1|AAD48773.1| 2322|Caenorhabditis elegans nonsense-medi...    28   6.9  
U49941-8|AAB53876.1| 2427|Caenorhabditis elegans Spectrin protei...    27   9.1  
AL034393-11|CAA22324.2| 2417|Caenorhabditis elegans Hypothetical...    27   9.1  
AJ250261-1|CAB59919.1| 2417|Caenorhabditis elegans hypothetical ...    27   9.1  
AC006665-3|AAF39905.1|  605|Caenorhabditis elegans Hypothetical ...    27   9.1  

>U40029-1|AAA81123.3|  360|Caenorhabditis elegans Serpentine
           receptor, class e (epsilon)protein 39 protein.
          Length = 360

 Score = 33.1 bits (72), Expect = 0.18
 Identities = 27/102 (26%), Positives = 42/102 (41%)
 Frame = +2

Query: 56  FLSNHHKNALNFFVDHYFKSLRRITMTSLNEQIEHPSFFWNCLALQDDCPFYSSIDPKLY 235
           F+    +    FF+  Y K  R    T+L       +F  +CLA  +   F + +     
Sbjct: 142 FILTCERACATFFITDYEKKSRAYICTTLLLLTHTATFLLSCLATCEILNFTTGVAIS-G 200

Query: 236 YFAVGLTCIYAAFFVIILADLQFYWSLDGLQQKIDYYSNLVR 361
            F VG   IY   F+I+  ++     LD   Q+  YYS  +R
Sbjct: 201 VFIVGAVVIY---FIILHINISIQKRLDDHDQQQKYYSLAIR 239


>AC006774-5|AAF60618.1|  363|Caenorhabditis elegans Hypothetical
           protein Y46H3A.4 protein.
          Length = 363

 Score = 31.5 bits (68), Expect = 0.56
 Identities = 12/44 (27%), Positives = 23/44 (52%)
 Frame = +2

Query: 44  SIIPFLSNHHKNALNFFVDHYFKSLRRITMTSLNEQIEHPSFFW 175
           S+ PF  + HK   N  +D ++K+  +    + +++  HP F W
Sbjct: 182 SVFPFNFDDHKTYFNVAIDDWWKNGFKFCHLAADKKFGHPIFIW 225


>Z93778-7|CAB07847.1|  800|Caenorhabditis elegans Hypothetical
           protein F36F2.5 protein.
          Length = 800

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 4/92 (4%)
 Frame = +2

Query: 74  KNALNFFVDHYFKSLRRITMTSLNEQIEHPSFFWN--CLALQDDCPFYSSIDPKLYYFAV 247
           KN   F +   F    R  MT L+  +    F +N  C+ L+   P Y + D  +Y+F V
Sbjct: 203 KNCFGFSLKGTFHPYGRFYMTWLS--LVTLCFLFNAFCIPLRSSYP-YQTADNWMYWFIV 259

Query: 248 GLTC--IYAAFFVIILADLQFYWSLDGLQQKI 337
             +C  +Y    ++I   L+F  +  G+Q KI
Sbjct: 260 DYSCDLVYVIDMLLIKPRLRF--TRGGIQVKI 289


>Z81532-9|CAB04328.1|  800|Caenorhabditis elegans Hypothetical
           protein F36F2.5 protein.
          Length = 800

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 4/92 (4%)
 Frame = +2

Query: 74  KNALNFFVDHYFKSLRRITMTSLNEQIEHPSFFWN--CLALQDDCPFYSSIDPKLYYFAV 247
           KN   F +   F    R  MT L+  +    F +N  C+ L+   P Y + D  +Y+F V
Sbjct: 203 KNCFGFSLKGTFHPYGRFYMTWLS--LVTLCFLFNAFCIPLRSSYP-YQTADNWMYWFIV 259

Query: 248 GLTC--IYAAFFVIILADLQFYWSLDGLQQKI 337
             +C  +Y    ++I   L+F  +  G+Q KI
Sbjct: 260 DYSCDLVYVIDMLLIKPRLRF--TRGGIQVKI 289


>U73476-1|AAB41492.1|  800|Caenorhabditis elegans cyclic
           nucleotide-gated channel protein.
          Length = 800

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 4/92 (4%)
 Frame = +2

Query: 74  KNALNFFVDHYFKSLRRITMTSLNEQIEHPSFFWN--CLALQDDCPFYSSIDPKLYYFAV 247
           KN   F +   F    R  MT L+  +    F +N  C+ L+   P Y + D  +Y+F V
Sbjct: 203 KNCFGFSLKGTFHPYGRFYMTWLS--LVTLCFLFNAFCIPLRSSYP-YQTADNWMYWFIV 259

Query: 248 GLTC--IYAAFFVIILADLQFYWSLDGLQQKI 337
             +C  +Y    ++I   L+F  +  G+Q KI
Sbjct: 260 DYSCDLVYVIDMLLIKPRLRF--TRGGIQVKI 289


>Z70781-2|CAA94832.1|  396|Caenorhabditis elegans Hypothetical
           protein F57A8.4 protein.
          Length = 396

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
 Frame = +2

Query: 35  LCSSIIPFLSNHHKNALNFFVDHYFKSLRRITMTSLNEQIEH-PSFFWNCLALQDDCPFY 211
           LC++I  F+     N+L+F +    + +  I +T L   I   P+FF   +  + DCP Y
Sbjct: 127 LCATIERFIVVAEINSLDFLISSTGRFVT-IGITFLGVAILRLPAFFEYFITYRPDCPLY 185

Query: 212 SSID 223
            + D
Sbjct: 186 ENYD 189


>Z49867-1|CAA90027.1|  312|Caenorhabditis elegans Hypothetical
          protein C33D3.3 protein.
          Length = 312

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -2

Query: 89 NLEHFCDGLTKTGLLKNIMTTFDNCIF 9
          +++HFCD L+  G  K     F NC++
Sbjct: 6  HMQHFCDNLSTPGCKKIRRNIFGNCLY 32


>AJ131742-1|CAA10498.1|  590|Caenorhabditis elegans protein (
           Caenorhabditis elegansmRNA for dystrobrevin. ).
          Length = 590

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +3

Query: 144 TNKSNTLHFSGIASPSKTIVHSIHR*IQ 227
           +N+     +S   SP+K +VHSIH+ +Q
Sbjct: 302 SNEHEMKEYSSYKSPTKQLVHSIHKSLQ 329


>AF098989-4|AAK18956.2|  590|Caenorhabditis elegans Dystrobrevin
           homolog protein 1 protein.
          Length = 590

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +3

Query: 144 TNKSNTLHFSGIASPSKTIVHSIHR*IQ 227
           +N+     +S   SP+K +VHSIH+ +Q
Sbjct: 302 SNEHEMKEYSSYKSPTKQLVHSIHKSLQ 329


>AF067942-6|AAG45579.1|  345|Caenorhabditis elegans Hypothetical
           protein ZK6.4 protein.
          Length = 345

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = -3

Query: 508 MCRSLIHRQSSS*SGDNSRTLATSFQLLFSSFLCRY 401
           MC  +    S S   +N R L TS+Q L+SS L +Y
Sbjct: 250 MCVLIFCNPSLSQLSENGRRLLTSYQHLYSSALLQY 285


>U97189-4|AAC48167.3| 2322|Caenorhabditis elegans Suppressor with
           morphological effecton genitalia protein 1, isoform a
           protein.
          Length = 2322

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = +3

Query: 411 RKELKSN*KEVAKVRELSPD*EELC-RWMRLRHILCWPFVKMKLRNIQHIVAANM 572
           +KE K+    + ++ + + + E LC +W  L   LCWP +    RN    +A  +
Sbjct: 23  QKERKAILARIEEILQTTKNVESLCVKWTYLLDNLCWPSLTKHDRNDMKTLAGKV 77


>U97189-3|AAT68901.1| 2019|Caenorhabditis elegans Suppressor with
           morphological effecton genitalia protein 1, isoform b
           protein.
          Length = 2019

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = +3

Query: 411 RKELKSN*KEVAKVRELSPD*EELC-RWMRLRHILCWPFVKMKLRNIQHIVAANM 572
           +KE K+    + ++ + + + E LC +W  L   LCWP +    RN    +A  +
Sbjct: 23  QKERKAILARIEEILQTTKNVESLCVKWTYLLDNLCWPSLTKHDRNDMKTLAGKV 77


>U55364-14|AAA97979.1|  210|Caenorhabditis elegans Hypothetical
           protein F21C10.1 protein.
          Length = 210

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -1

Query: 447 WRLLFSCFSVLSCVDTNLC 391
           WRLLF C   LSC +   C
Sbjct: 101 WRLLFECDESLSCCELECC 119


>AF149821-1|AAD48773.1| 2322|Caenorhabditis elegans
           nonsense-mediated mRNA decay proteinSMG-1 protein.
          Length = 2322

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = +3

Query: 411 RKELKSN*KEVAKVRELSPD*EELC-RWMRLRHILCWPFVKMKLRNIQHIVAANM 572
           +KE K+    + ++ + + + E LC +W  L   LCWP +    RN    +A  +
Sbjct: 23  QKERKAILARIEEILQTTKNVESLCVKWTYLLDNLCWPSLTKHDRNDMKTLAGKV 77


>U49941-8|AAB53876.1| 2427|Caenorhabditis elegans Spectrin protein 1
            protein.
          Length = 2427

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
 Frame = -2

Query: 275  KMRRICKSVPQRSNKVLDLS--MNRMDNRLGGRGNSRKMK 162
            K  R+ +S P+ + ++ DL   +N   NRL  + N+RK K
Sbjct: 1254 KANRLRQSHPEAAEQIYDLQRELNEQWNRLTSKANNRKEK 1293


>AL034393-11|CAA22324.2| 2417|Caenorhabditis elegans Hypothetical
            protein Y18D10A.13 protein.
          Length = 2417

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = -1

Query: 504  VGVSSIDKVPLNPVIIPVLWRLLFSCFSVLSCVDTNLCW 388
            VG+++IDK    P   P+L  L+ SC S +      LCW
Sbjct: 1815 VGITTIDKANF-PTEEPLL-ELVHSCVSAVLQTQLRLCW 1851


>AJ250261-1|CAB59919.1| 2417|Caenorhabditis elegans hypothetical
            protein protein.
          Length = 2417

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = -1

Query: 504  VGVSSIDKVPLNPVIIPVLWRLLFSCFSVLSCVDTNLCW 388
            VG+++IDK    P   P+L  L+ SC S +      LCW
Sbjct: 1815 VGITTIDKANF-PTEEPLL-ELVHSCVSAVLQTQLRLCW 1851


>AC006665-3|AAF39905.1|  605|Caenorhabditis elegans Hypothetical
           protein H27M09.3 protein.
          Length = 605

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
 Frame = +2

Query: 299 QFYWSLDGLQQKIDYYSNLVRKKVRRVQ-MNQQRLVSTQERTEKQLKRS 442
           Q Y+  D L++ +   +     + RRVQ +N+QRLV T   TE+ + +S
Sbjct: 111 QKYYECDDLRKSVQETNT----EARRVQEINEQRLVDTTRATEELIVKS 155


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,853,820
Number of Sequences: 27780
Number of extensions: 347429
Number of successful extensions: 990
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 960
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 989
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1508017654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)