Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8n15
         (663 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0659 - 18453778-18453903,18453976-18454963,18455496-184562...    33   0.20 
06_01_0936 - 7220333-7220508,7221208-7221327,7221898-7223089           31   1.1  
08_01_0871 + 8502396-8502417,8503606-8503732,8503891-8503990,850...    29   3.3  
04_01_0438 - 5723451-5723759,5723795-5723863,5724025-5724210,572...    29   4.4  
02_02_0739 - 13560241-13560622,13561192-13561239,13563727-13564949     29   4.4  
08_02_1023 - 23710825-23710950,23711037-23711120,23711367-237114...    28   7.6  

>04_03_0659 -
           18453778-18453903,18453976-18454963,18455496-18456229,
           18456292-18456360,18456528-18456605,18456703-18456789,
           18456881-18456931,18457021-18457092,18457177-18457304,
           18458194-18458275,18458705-18458754,18459043-18459096,
           18459586-18459675,18459903-18459983,18460443-18460538,
           18460960-18461022,18461313-18461402,18461630-18461698,
           18462051-18462291
          Length = 1082

 Score = 33.1 bits (72), Expect = 0.20
 Identities = 20/89 (22%), Positives = 42/89 (47%)
 Frame = +1

Query: 175 REGRTRSMAVMMELEESVSDSKLHKESTAKKDLRPSSAISFSKSDHGPETTSSTEQLRQY 354
           +E  T       +  +++++ ++HKE T K +   S  +S SKS      TS+ E+ ++ 
Sbjct: 118 QEMETNEQVKSKDTSKAIAE-RIHKEYTTKVNKHESRTVSNSKSKEQLIRTSNIEEKQKR 176

Query: 355 KSWVSNERWNELKKIAETAMKQRKVFMIK 441
           K  +S     ++ ++   A +  K +  K
Sbjct: 177 KQIISENNSKDMTQVQANAEEFHKEYTTK 205


>06_01_0936 - 7220333-7220508,7221208-7221327,7221898-7223089
          Length = 495

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 24/104 (23%), Positives = 44/104 (42%)
 Frame = +1

Query: 196 MAVMMELEESVSDSKLHKESTAKKDLRPSSAISFSKSDHGPETTSSTEQLRQYKSWVSNE 375
           MA+ M  EES S S   + S +   +  S     + +  G  ++     +R ++      
Sbjct: 63  MAMAMVREESTSSSSQGEVSRSTVAVTGSPVKCLAATGDGLVSSHQDGTIRVWRH-AGGR 121

Query: 376 RWNELKKIAETAMKQRKVFMIKGGGFPAIRRAMLERGWVEKYES 507
           R   L+ +  TA    +  ++ GGG+  +RR    R WV   ++
Sbjct: 122 RRLALRAVLPTAADCLRALLLPGGGYVEVRRHK-RRAWVHHVDA 164


>08_01_0871 +
           8502396-8502417,8503606-8503732,8503891-8503990,
           8504725-8504793,8504870-8505043,8505196-8505373,
           8505462-8505594,8505702-8505864,8507031-8507181,
           8507266-8507366,8507633-8507788,8508105-8508173,
           8508256-8508324,8508403-8508540,8508639-8508767,
           8509013-8509053,8510019-8510106,8510199-8510339,
           8510428-8510553,8510671-8510736,8510994-8511291,
           8511387-8511595,8511689-8511802
          Length = 953

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +1

Query: 379 WNELKKIAETAMKQRKVFMIKGGGFPAI 462
           W+  K +      QRK+ ++KGGG PA+
Sbjct: 719 WDSAKSLMHGNSYQRKLSIVKGGGSPAL 746


>04_01_0438 -
           5723451-5723759,5723795-5723863,5724025-5724210,
           5724297-5724558,5724662-5724960,5725040-5725453,
           5725533-5725899,5726002-5726146,5726562-5727558
          Length = 1015

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 17/66 (25%), Positives = 29/66 (43%)
 Frame = +1

Query: 211 ELEESVSDSKLHKESTAKKDLRPSSAISFSKSDHGPETTSSTEQLRQYKSWVSNERWNEL 390
           EL    SD +  + + A  D  P  A+    +D       + EQ+R++  W+ NE   + 
Sbjct: 23  ELTGKCSDQRATRPAAAVPD--PPQALGALPTDSVTLVRRTGEQIRKFSQWIENEPKEKW 80

Query: 391 KKIAET 408
            K  +T
Sbjct: 81  AKTYDT 86


>02_02_0739 - 13560241-13560622,13561192-13561239,13563727-13564949
          Length = 550

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +1

Query: 382 NELKKIAETAMKQRKVFMIKGGGFPAIRRAMLERGWVEKYE 504
           NEL+++        K F+I GGG P I  +M    W ++ +
Sbjct: 415 NELQRVNWLRCLVNKRFLIAGGGAPEIEMSMQLAAWAKELQ 455


>08_02_1023 -
           23710825-23710950,23711037-23711120,23711367-23711492,
           23711593-23711712,23712046-23712153,23712243-23712395,
           23712505-23712600,23712716-23712800,23713278-23714268,
           23714870-23714915,23715806-23715964,23716516-23716651,
           23716734-23716900,23717366-23717696,23717827-23718062,
           23718326-23718514
          Length = 1050

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 2/64 (3%)
 Frame = +1

Query: 436 IKGGGFPAIRRAMLERGWVEKYESHKVRHPP--TNVDPKKASGKELSKVERMILYKFMGT 609
           +  G F + R A L R W   +    V  PP     D ++  G  +  +E ++++   G 
Sbjct: 380 VGNGPFSSTRHARLARSWAAHFGRWGVFFPPPTPQADEEEEQGSSVEMLEELLIFT-RGG 438

Query: 610 SLCW 621
            + W
Sbjct: 439 LILW 442


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,465,777
Number of Sequences: 37544
Number of extensions: 352965
Number of successful extensions: 962
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 948
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 962
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1667659452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)