Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte8n14
(648 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 192 5e-50
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 163 2e-41
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 107 1e-24
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 99 3e-22
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 83 4e-17
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 80 2e-16
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 80 2e-16
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 77 2e-15
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 71 2e-13
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 70 3e-13
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 66 5e-12
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 62 5e-11
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 61 1e-10
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 58 1e-09
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 58 1e-09
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 58 1e-09
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 53 4e-08
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 51 2e-07
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 47 2e-06
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 46 6e-06
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 43 3e-05
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 42 8e-05
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 41 2e-04
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos... 38 0.002
SPBC27.02c |ask1|mug181|DASH complex subunit Ask1|Schizosaccharo... 29 0.44
SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar... 28 1.3
SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces p... 27 1.8
SPAPJ696.01c |vps17||retromer complex subunit Vps17|Schizosaccha... 27 2.3
SPCC777.06c |||hydrolase |Schizosaccharomyces pombe|chr 3|||Manual 27 3.1
SPAC27E2.07 |pvg2|mug53|galactose residue biosynthesis protein P... 26 4.1
SPAC5D6.08c |mes1||meiosis II protein Mes1|Schizosaccharomyces p... 26 5.4
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces... 25 7.1
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 192 bits (467), Expect = 5e-50
Identities = 87/116 (75%), Positives = 107/116 (92%)
Frame = +2
Query: 299 MDPGTLDTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQ 478
++ ++T++D+V++TFDDMNLK ELLRGIYAYGFE+PSAIQQRAIMP + RDV+AQAQ
Sbjct: 5 LEDSVIETNYDEVIDTFDDMNLKPELLRGIYAYGFERPSAIQQRAIMPILGERDVLAQAQ 64
Query: 479 SGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHA 646
SGTGKTATFSIS+LQ+IDTS+++CQALILAPTRELAQQIQKVV+ALGD +N +CHA
Sbjct: 65 SGTGKTATFSISVLQKIDTSLKQCQALILAPTRELAQQIQKVVVALGDLMNVECHA 120
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 163 bits (396), Expect = 2e-41
Identities = 80/117 (68%), Positives = 95/117 (81%), Gaps = 1/117 (0%)
Frame = +2
Query: 299 MDPGTLDTDWD-QVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQA 475
M+ L T D V +F++MNLKE+LLRGIYAYG+E PSA+Q RAI+ +GRDVIAQA
Sbjct: 6 MENVELTTSEDVNAVSSFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRDVIAQA 65
Query: 476 QSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHA 646
QSGTGKTATFSI ILQ ID S+R+ QALIL+PTRELA QIQ VV+ALGDH+N +CHA
Sbjct: 66 QSGTGKTATFSIGILQSIDLSVRDTQALILSPTRELAVQIQNVVLALGDHMNVQCHA 122
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 107 bits (258), Expect = 1e-24
Identities = 57/133 (42%), Positives = 80/133 (60%), Gaps = 4/133 (3%)
Frame = +2
Query: 251 KNGPSKDQGSYDGPPGMDPGTLDTDWDQVVET----FDDMNLKEELLRGIYAYGFEKPSA 418
+N D+ S+ G P + + V +T F+D LK ELL GI+ GFE+PS
Sbjct: 10 ENANLNDRESFKGQMKAQPVDMRPKTEDVTKTRGTEFEDYYLKRELLMGIFEAGFERPSP 69
Query: 419 IQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQ 598
IQ+ +I + GRD++A+A++GTGKTA F I L+++DT + Q LIL PTRELA Q
Sbjct: 70 IQEESIPIALSGRDILARAKNGTGKTAAFVIPSLEKVDTKKSKIQTLILVPTRELALQTS 129
Query: 599 KVVIALGDHLNAK 637
+V LG H+N K
Sbjct: 130 QVCKTLGKHMNVK 142
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 99 bits (238), Expect = 3e-22
Identities = 47/102 (46%), Positives = 75/102 (73%), Gaps = 2/102 (1%)
Frame = +2
Query: 338 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQG--RDVIAQAQSGTGKTATFSI 511
V++F+++ LK ELL+GIY+ F+KPS IQ++A+ + R++I Q+QSGTGKTA F++
Sbjct: 113 VKSFEELELKPELLKGIYSMKFQKPSKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFAL 172
Query: 512 SILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAK 637
++L ++D S+ + QA+ LAP+RELA+QI VV +G + K
Sbjct: 173 TMLSRVDASVPKPQAICLAPSRELARQIMDVVTEMGKYTEVK 214
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 82.6 bits (195), Expect = 4e-17
Identities = 43/95 (45%), Positives = 62/95 (65%), Gaps = 6/95 (6%)
Frame = +2
Query: 341 ETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISIL 520
+TF D NL L R I+ FEKP+++Q I ++G+D++AQA++G+GKTA + I IL
Sbjct: 14 KTFSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGKDLVAQARTGSGKTAAYLIPIL 73
Query: 521 Q------QIDTSIRECQALILAPTRELAQQIQKVV 607
+ QID + R AL+L PTRELAQQ+ V+
Sbjct: 74 ELLLKQKQIDENQRGIFALLLVPTRELAQQVYNVL 108
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 80.2 bits (189), Expect = 2e-16
Identities = 45/84 (53%), Positives = 52/84 (61%)
Frame = +2
Query: 347 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 526
F D LK ELLR I GFE PS +QQ I I G DV+ QA+SG GKTA F +S LQQ
Sbjct: 53 FRDFLLKPELLRAITDSGFEHPSEVQQVCIPQSILGTDVLCQAKSGMGKTAVFVLSTLQQ 112
Query: 527 IDTSIRECQALILAPTRELAQQIQ 598
I+ E L+L TRELA QI+
Sbjct: 113 IEPVDGEVSVLVLCHTRELAFQIK 136
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 80.2 bits (189), Expect = 2e-16
Identities = 46/145 (31%), Positives = 78/145 (53%)
Frame = +2
Query: 203 MSYSSERRSEDWPEDSKNGPSKDQGSYDGPPGMDPGTLDTDWDQVVETFDDMNLKEELLR 382
M+ S ++ +ED S N + S + D+ ++ +TF ++ + +EL
Sbjct: 1 MAPSEKKLTEDKKNSSLNKKIETSNS-SSEKSSENNNGDSQNNEAPKTFKELGVIDELCE 59
Query: 383 GIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALI 562
GF+ P+ IQQ AI + RDVI AQ+G+GKTA F++ ++Q++ + A++
Sbjct: 60 ACEKLGFKTPTPIQQEAIPVVLNKRDVIGLAQTGSGKTAAFALPVIQELWNNPSPFFAVV 119
Query: 563 LAPTRELAQQIQKVVIALGDHLNAK 637
LAPTRELA QI + A+G + +
Sbjct: 120 LAPTRELAYQISEQFEAIGGSIGVR 144
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 77.0 bits (181), Expect = 2e-15
Identities = 38/89 (42%), Positives = 59/89 (66%), Gaps = 2/89 (2%)
Frame = +2
Query: 347 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 526
F M L + LLR I+ GF+ P+ IQ++ I ++GRDV+ A++G+GKTA F I +++
Sbjct: 71 FQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRDVVGMARTGSGKTAAFVIPMIEH 130
Query: 527 IDTSI--RECQALILAPTRELAQQIQKVV 607
+ +++ +ALIL+P RELA Q KVV
Sbjct: 131 LKSTLANSNTRALILSPNRELALQTVKVV 159
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 70.5 bits (165), Expect = 2e-13
Identities = 35/90 (38%), Positives = 53/90 (58%), Gaps = 3/90 (3%)
Frame = +2
Query: 344 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQ 523
+F MNL +L+G+ GFE P+ IQ + I + G+D++ A +G+GKTA F + IL+
Sbjct: 260 SFQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVTGSGKTAAFIVPILE 319
Query: 524 QI---DTSIRECQALILAPTRELAQQIQKV 604
++ + + LIL PTRELA Q V
Sbjct: 320 RLLYRPKKVPTTRVLILCPTRELAMQCHSV 349
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 70.1 bits (164), Expect = 3e-13
Identities = 39/102 (38%), Positives = 61/102 (59%)
Frame = +2
Query: 341 ETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISIL 520
++F D+ + L+ + A +P+ IQ+ I ++GR+ I A++G+GKTA F++ I+
Sbjct: 7 KSFSDLGISPWLIDTLKALAIYEPTDIQEGVIAQILEGRNCIGGAKTGSGKTAAFALPII 66
Query: 521 QQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHA 646
++ ALIL PTRELA QI + ALG +LN K HA
Sbjct: 67 EKWSKDPSGIFALILTPTRELAIQIDEQFAALGANLNLK-HA 107
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 65.7 bits (153), Expect = 5e-12
Identities = 36/90 (40%), Positives = 54/90 (60%), Gaps = 4/90 (4%)
Frame = +2
Query: 338 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATF---S 508
+E F D+ L E + + I GFE + IQ+R+I P + GRDV+ A++G+GKT F +
Sbjct: 88 IEKFSDLQLSENIQKAIKEMGFETMTEIQKRSIPPLLAGRDVLGAAKTGSGKTLAFLIPT 147
Query: 509 ISILQQIDTSIRE-CQALILAPTRELAQQI 595
I +L + R +I++PTRELA QI
Sbjct: 148 IEMLYALKFKPRNGTGVIIISPTRELALQI 177
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 62.5 bits (145), Expect = 5e-11
Identities = 35/88 (39%), Positives = 48/88 (54%), Gaps = 2/88 (2%)
Frame = +2
Query: 338 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISI 517
V + +L E+L + GF KP IQ I G D+I +A +G+GKT F I I
Sbjct: 121 VSAWAHFSLSPEMLGSLSKAGFSKPMPIQSLVIPEASIGFDIIGKADTGSGKTLAFGIPI 180
Query: 518 LQQI--DTSIRECQALILAPTRELAQQI 595
L+ + + QAL++APTRELA QI
Sbjct: 181 LEHCLRNVDAKYVQALVVAPTRELAHQI 208
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 61.3 bits (142), Expect = 1e-10
Identities = 38/114 (33%), Positives = 63/114 (55%), Gaps = 8/114 (7%)
Frame = +2
Query: 323 DWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTAT 502
D + +++ L E+L+ + +++PS+IQ+ AI +Q +D+I A++G+GKTA
Sbjct: 243 DLPNPLRNWEEAGLPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRKDLIGIAETGSGKTAA 302
Query: 503 FSISILQQID--TSIRECQ------ALILAPTRELAQQIQKVVIALGDHLNAKC 640
F I ++ I + E A++LAPTRELAQQIQ + L +C
Sbjct: 303 FIIPLIIAISKLPPLTESNMHLGPYAVVLAPTRELAQQIQVEGNKFAEPLGFRC 356
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 57.6 bits (133), Expect = 1e-09
Identities = 34/96 (35%), Positives = 55/96 (57%), Gaps = 5/96 (5%)
Frame = +2
Query: 323 DWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTAT 502
D + V ++ L + + I + G+EKP++IQ +AI GRDVI A++G+GKT
Sbjct: 412 DCPKPVTSWSQCGLSAQTISVINSLGYEKPTSIQAQAIPAITSGRDVIGVAKTGSGKTIA 471
Query: 503 FSISILQQI--DTSIRECQ---ALILAPTRELAQQI 595
F + + + I ++ + A+I+ PTRELA QI
Sbjct: 472 FLLPMFRHIKDQRPLKTGEGPIAIIMTPTRELAVQI 507
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 57.6 bits (133), Expect = 1e-09
Identities = 31/90 (34%), Positives = 52/90 (57%), Gaps = 3/90 (3%)
Frame = +2
Query: 344 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQ 523
+F +N+ + L + A GF+K + +Q AI ++ +D++ +A +G+GKT + +
Sbjct: 2 SFQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKNKDLVVEAVTGSGKTLAYLLPCFD 61
Query: 524 QI---DTSIRECQALILAPTRELAQQIQKV 604
++ DT ALI+APTRELA QI V
Sbjct: 62 KVTRRDTDETGLGALIVAPTRELATQIFNV 91
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 57.6 bits (133), Expect = 1e-09
Identities = 33/99 (33%), Positives = 53/99 (53%), Gaps = 5/99 (5%)
Frame = +2
Query: 338 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISI 517
V TF++ +L+ + GFE P+ IQQ+A + GRD++ + +G+GKT ++ +
Sbjct: 121 VTTFEEAGFPNYVLKEVKQLGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCLPA 180
Query: 518 LQQIDTSIRECQ-----ALILAPTRELAQQIQKVVIALG 619
+ I+ L+LAPTRELA QIQ+ G
Sbjct: 181 IVHINAQPLLSPGDGPIVLVLAPTRELAVQIQQECTKFG 219
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 52.8 bits (121), Expect = 4e-08
Identities = 28/100 (28%), Positives = 57/100 (57%), Gaps = 4/100 (4%)
Frame = +2
Query: 332 QVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSI 511
+ V+ F ++ L + + F + IQ++ I ++GRD++ A++G+GKT F +
Sbjct: 36 ETVDHFAELPLTQPTKSALKNAHFITLTEIQKQCIPSALKGRDILGAAKTGSGKTLAFIV 95
Query: 512 SILQQID----TSIRECQALILAPTRELAQQIQKVVIALG 619
+++ + TS+ AL+++PTRELA Q + ++ +G
Sbjct: 96 PLIENLYRKKWTSLDGLGALVISPTRELAIQTFETLVKIG 135
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 50.8 bits (116), Expect = 2e-07
Identities = 32/100 (32%), Positives = 56/100 (56%), Gaps = 3/100 (3%)
Frame = +2
Query: 347 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 526
FD++++ +L G+ Y ++P+ IQ + GRDV+ A++G+GKT F I LQ
Sbjct: 169 FDELDVSAKLREGLKNY--KEPTPIQAATWPYLLAGRDVVGIAETGSGKTVAFGIPALQY 226
Query: 527 ID---TSIRECQALILAPTRELAQQIQKVVIALGDHLNAK 637
++ + + L+++PTRELA Q + + +L N K
Sbjct: 227 LNGLSDNKSVPRVLVVSPTRELAIQTYENLNSLIQGTNLK 266
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 47.2 bits (107), Expect = 2e-06
Identities = 38/106 (35%), Positives = 51/106 (48%), Gaps = 18/106 (16%)
Frame = +2
Query: 338 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISI 517
V F L LL+ I G+ +P+ +Q+ +I GRD++A AQ+G+GKTA F I
Sbjct: 168 VNEFTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGRDLMACAQTGSGKTAGFLFPI 227
Query: 518 L--------------QQIDTSIRECQA----LILAPTRELAQQIQK 601
L Q R +A LILAPTREL QI +
Sbjct: 228 LSLAFDKGPAAVPVDQDAGMGYRPRKAYPTTLILAPTRELVCQIHE 273
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 45.6 bits (103), Expect = 6e-06
Identities = 30/84 (35%), Positives = 47/84 (55%), Gaps = 6/84 (7%)
Frame = +2
Query: 368 EELLRGIYAYGFEKPSAIQ----QRAIMPCIQG-RDVIAQAQSGTGKTATFSISILQQID 532
EE GI +K + + QR +P I RD++A A +G+GKT + ILQ++
Sbjct: 50 EEFPEGILCENLKKQNITECTTIQRYAIPTIGSKRDLLACAPTGSGKTIAYLFPILQKLQ 109
Query: 533 TSI-RECQALILAPTRELAQQIQK 601
+ +A+I+APTREL +QI +
Sbjct: 110 LHVPGGYRAIIVAPTRELCEQIYR 133
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 43.2 bits (97), Expect = 3e-05
Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 6/72 (8%)
Frame = +2
Query: 398 GFEKPSAIQQRAIMPCIQGRD-VIAQAQSGTGKTATFSISILQQI-----DTSIRECQAL 559
GFEK + +QQR + + + QA++GTGKT F + + + + + ++
Sbjct: 57 GFEKMTPVQQRVLNEVFPNEENAVVQAKTGTGKTLAFLLVAFKDVLKGKPRLNSSKIHSV 116
Query: 560 ILAPTRELAQQI 595
IL+PTRELA QI
Sbjct: 117 ILSPTRELALQI 128
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 41.9 bits (94), Expect = 8e-05
Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 9/81 (11%)
Frame = +2
Query: 410 PSAIQQRAIMPCIQ--GRDVIAQAQSGTGKTATFSISILQQI-------DTSIRECQALI 562
P+AIQ + + +D +AQ+G+GKT + + I+Q++ T A+I
Sbjct: 162 PTAIQSCCLPALLNTDDKDAFIEAQTGSGKTLAYLLPIVQRLIRLPKNLHTRTSGIYAVI 221
Query: 563 LAPTRELAQQIQKVVIALGDH 625
+APTREL QQI V L ++
Sbjct: 222 MAPTRELCQQIYNVANKLNNN 242
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 40.7 bits (91), Expect = 2e-04
Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Frame = +2
Query: 365 KEELLRGIYAYGFEKPSAIQQRAIMPCIQ-GRDVIAQAQSGTGKTATFSISILQQID-TS 538
K+ + RG P +Q P G DV A +G+GKT ++ I I+Q + +
Sbjct: 143 KQNITRGFAVQAAVLPLLLQDGRHGPMYSYGGDVCVSAATGSGKTLSYVIPIVQCLSHRT 202
Query: 539 IRECQALILAPTRELAQQIQK 601
+ + +++ PTREL Q+ K
Sbjct: 203 VPRLRCVVIVPTRELTVQVAK 223
>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1063
Score = 37.5 bits (83), Expect = 0.002
Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Frame = +2
Query: 362 LKEELLRGIY-AYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQIDTS 538
L +EL+ +Y + EK Q AI G VI + +GK+ + I ILQ +
Sbjct: 295 LSQELINALYTSRNIEKTYKHQADAINHLWNGFHVIVSTSTSSGKSLIYQIPILQSL-LE 353
Query: 539 IRECQALILAPTRELAQQIQKVVI 610
+ A + PT+ LAQ +K +I
Sbjct: 354 DNQSTAFFVFPTKSLAQDQKKSLI 377
>SPBC27.02c |ask1|mug181|DASH complex subunit
Ask1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 307
Score = 29.5 bits (63), Expect = 0.44
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +2
Query: 314 LDTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRD 460
LDT+W V + NL+ + + I + F PS I + MP + R+
Sbjct: 184 LDTNWQVQVTPREPKNLQSQEVMDIDSSPFVSPSPISMKMDMPSLNDRN 232
>SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 466
Score = 27.9 bits (59), Expect = 1.3
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +2
Query: 311 TLDTDWDQVVETFDDMNLKEELLRGIYAYGF 403
T D WD E FDD N + +GI+ F
Sbjct: 281 TDDIAWDPQCEYFDDCNSDQTAFKGIFMQSF 311
>SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 505
Score = 27.5 bits (58), Expect = 1.8
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 5/44 (11%)
Frame = +2
Query: 482 GTGKTATFSISILQQI----DTSIRECQALILAP-TRELAQQIQ 598
G G T F+ SILQQI + SI +C + +P R + ++IQ
Sbjct: 89 GKGSTCAFTSSILQQIQKSGERSIPKCIGMYTSPHLRSVCERIQ 132
>SPAPJ696.01c |vps17||retromer complex subunit
Vps17|Schizosaccharomyces pombe|chr 1|||Manual
Length = 549
Score = 27.1 bits (57), Expect = 2.3
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +1
Query: 514 DSTTNRYKHS*MSSFDPGSHKRAGPTNSEGGDSS 615
D+ TNR + SSFD S P+N++G ++
Sbjct: 487 DAWTNRKRPGYSSSFDGSSQSTFNPSNNDGAHNT 520
>SPCC777.06c |||hydrolase |Schizosaccharomyces pombe|chr 3|||Manual
Length = 301
Score = 26.6 bits (56), Expect = 3.1
Identities = 10/13 (76%), Positives = 11/13 (84%)
Frame = +3
Query: 288 DLREWTLGHLTPT 326
DLREWTLG L P+
Sbjct: 110 DLREWTLGFLQPS 122
>SPAC27E2.07 |pvg2|mug53|galactose residue biosynthesis protein
Pvg2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 389
Score = 26.2 bits (55), Expect = 4.1
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = -3
Query: 628 QVITKSYHHLLNLLGQLSCGSQDQ 557
+++ KSYH+L N QLS ++DQ
Sbjct: 165 ELVDKSYHNLHNAWSQLSREAKDQ 188
>SPAC5D6.08c |mes1||meiosis II protein Mes1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 101
Score = 25.8 bits (54), Expect = 5.4
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -2
Query: 308 QGPFPEVHRNYLDPSMAHFWNPLANL 231
Q P P VH ++ PS A NPL ++
Sbjct: 75 QNPPPSVHSSHKQPSKARSPNPLLSM 100
>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 25.4 bits (53), Expect = 7.1
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = +2
Query: 317 DTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGR 457
DTDWD +V + D++L+ RGI A G + + + P + +
Sbjct: 618 DTDWDALV-SLSDLDLQN---RGIMALGARRKLLKSFQEVAPLVSSK 660
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,584,851
Number of Sequences: 5004
Number of extensions: 54158
Number of successful extensions: 178
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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