Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8n13
         (552 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyce...    30   0.26 
SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr 2|...    28   0.80 
SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10 |...    28   1.1  
SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    27   2.4  
SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase Ogm4|Schizo...    25   9.8  
SPAC4F10.09c |||ribosome biogenesis protein Noc1 |Schizosaccharo...    25   9.8  
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa...    25   9.8  
SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces ...    25   9.8  

>SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 29.9 bits (64), Expect = 0.26
 Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
 Frame = -1

Query: 462 SLKIDLT*GLWDSTPLVPKWTVCTLLSATLLEGTFSSD--VDNVVTRNFFLS 313
           SL IDL+  +W+  PL  +W+   L S++ +  TF +    +++ T  FFL+
Sbjct: 103 SLLIDLS--IWNIVPLNARWSALLLYSSSFMATTFQTHTFTNSIETIFFFLT 152


>SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 461

 Score = 28.3 bits (60), Expect = 0.80
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = +2

Query: 290 NENQTIVGERKKFLVTTLSTSDEKVPSSSVAESN 391
           + N T  GE+K +  TTLST+    PSS  + SN
Sbjct: 406 SSNATYSGEQKTYSPTTLSTNAPPSPSSGRSCSN 439


>SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 791

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +3

Query: 222 SLQPNMEKQNTKIRRRKIKSNHQMKIKP 305
           SL+P+ E Q + ++ +K KSN  ++  P
Sbjct: 503 SLKPDTENQESSVKNKKAKSNVNLQYSP 530


>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1096

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -2

Query: 398 YVHYFLLHYWKEPFHQMWIMS*QETSSFPL 309
           Y  Y  L ++ EP +  W++   ETS++ L
Sbjct: 126 YFEYKKLRFYLEPLNLQWVLMPLETSAYSL 155


>SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase
           Ogm4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 778

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -2

Query: 272 FSSSYFCVLFFHVWLETRWWQIHF 201
           F + +FC++FF       W+ +HF
Sbjct: 283 FLARFFCLIFFPFLFFLFWFYMHF 306


>SPAC4F10.09c |||ribosome biogenesis protein Noc1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 860

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -3

Query: 535 VERFIFFATRISICTRRTSCFYRTIFKNRS 446
           +ERFIF  +     T RTSC+Y  I  N++
Sbjct: 271 IERFIFAPS-----TSRTSCYYTLITLNQT 295


>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1628

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -2

Query: 197  KLDPCPNYLTTEGKQHILYHNLMKQIVQSDCVQ 99
            K+    N L  E K+HI     +++++Q DCV+
Sbjct: 1025 KIMQLSNSLQNELKEHINSLESVRKVLQGDCVK 1057


>SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1213

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -2

Query: 311  LQWFDFHLVVRLDFSSSYFCVLF 243
            L W  FH+ +R  FS S+  ++F
Sbjct: 1008 LPWAVFHIFLRYLFSHSFLVIIF 1030


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,295,936
Number of Sequences: 5004
Number of extensions: 48117
Number of successful extensions: 120
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)