Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8n13
         (552 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0350 + 9239138-9240218,9240755-9240906,9241392-9241457,924...    29   2.5  
07_03_1526 + 27456426-27456700,27457936-27458023,27458129-274587...    28   5.7  
08_01_0342 - 3016705-3016884,3016963-3017031,3017322-3017408,301...    27   10.0 
04_01_0058 + 592846-593185,594641-595182,596298-596987,597078-59...    27   10.0 

>02_02_0350 +
           9239138-9240218,9240755-9240906,9241392-9241457,
           9242715-9242951
          Length = 511

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 14/28 (50%), Positives = 20/28 (71%)
 Frame = -1

Query: 429 DSTPLVPKWTVCTLLSATLLEGTFSSDV 346
           DS   V   T+C+LL+ATL+E  F+SD+
Sbjct: 373 DSISAVFVETICSLLAATLIELRFTSDL 400


>07_03_1526 +
           27456426-27456700,27457936-27458023,27458129-27458725,
           27458731-27460056,27460283-27460729
          Length = 910

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = -3

Query: 523 IFFATRISICTRRTSCFYRTIFKNRSHMRPLGF 425
           IFF     I TR     Y+  F+ R   RPLG+
Sbjct: 85  IFFLEATRIFTRNNMLDYQLFFRTRGAFRPLGW 117


>08_01_0342 -
           3016705-3016884,3016963-3017031,3017322-3017408,
           3017603-3017650,3017783-3017873,3018243-3018322,
           3018429-3018533,3019457-3019551,3019710-3019788,
           3020214-3020402
          Length = 340

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = -1

Query: 423 TPLVPKW--TVCTLLSATLLEGTFSSDVDNVVTRNFF 319
           T +VP+W   VC +L   +  G F++ VD ++ ++ F
Sbjct: 274 TGIVPEWQVVVCGVLLIAMAIGNFANTVDTLMAKSRF 310


>04_01_0058 +
           592846-593185,594641-595182,596298-596987,597078-597233,
           597277-597856,598601-598764,598907-599100,599702-599750,
           599777-599806
          Length = 914

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = -1

Query: 234 LVGDSVVADSFSKIGSMSKLFDY*R*TAYIVP*SNEADST 115
           LV     AD+  KI  + KLF +    +Y++P  N+A+ T
Sbjct: 208 LVESITNADTEEKISVVDKLFQFETLQSYLIPAPNQAEVT 247


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,246,580
Number of Sequences: 37544
Number of extensions: 278008
Number of successful extensions: 606
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 599
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 606
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1245816180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)