Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8n13
         (552 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L11247-7|AAA28003.3|   91|Caenorhabditis elegans Hypothetical pr...    31   0.73 
AY255665-1|AAQ96602.1|   91|Caenorhabditis elegans MiRP2 protein.      31   0.73 
U80451-1|AAB37835.1|  591|Caenorhabditis elegans Dnaj domain (pr...    30   0.96 
AF025468-7|AAB71044.1|  248|Caenorhabditis elegans Hypothetical ...    30   0.96 
Z81481-2|CAB03948.1|  593|Caenorhabditis elegans Hypothetical pr...    29   2.2  
AF016447-3|AAG24018.1|  349|Caenorhabditis elegans Hypothetical ...    27   9.0  

>L11247-7|AAA28003.3|   91|Caenorhabditis elegans Hypothetical
           protein F09G8.9 protein.
          Length = 91

 Score = 30.7 bits (66), Expect = 0.73
 Identities = 11/32 (34%), Positives = 22/32 (68%)
 Frame = -2

Query: 320 SFPLQWFDFHLVVRLDFSSSYFCVLFFHVWLE 225
           S+P ++FDF LV+ + F   + C+++  +W+E
Sbjct: 36  SYPTKYFDFLLVIIMTF--VFLCLVYLLIWIE 65


>AY255665-1|AAQ96602.1|   91|Caenorhabditis elegans MiRP2 protein.
          Length = 91

 Score = 30.7 bits (66), Expect = 0.73
 Identities = 11/32 (34%), Positives = 22/32 (68%)
 Frame = -2

Query: 320 SFPLQWFDFHLVVRLDFSSSYFCVLFFHVWLE 225
           S+P ++FDF LV+ + F   + C+++  +W+E
Sbjct: 36  SYPTKYFDFLLVIIMTF--VFLCLVYLLIWIE 65


>U80451-1|AAB37835.1|  591|Caenorhabditis elegans Dnaj domain
           (prokaryotic heat shockprotein) protein 9 protein.
          Length = 591

 Score = 30.3 bits (65), Expect = 0.96
 Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = -2

Query: 281 RLDFSSSYFCVL-FFHVWLETRWWQIHFLKLDPCPNYLTT 165
           RL   SS FC + F+ + L TRW     L + P  N LTT
Sbjct: 275 RLFTDSSIFCKIPFYSMRLHTRWQGSIVLNISPIANALTT 314


>AF025468-7|AAB71044.1|  248|Caenorhabditis elegans Hypothetical
           protein T27A1.3 protein.
          Length = 248

 Score = 30.3 bits (65), Expect = 0.96
 Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
 Frame = -2

Query: 206 HFLKLDPCPNYLTTEGKQHILYHNLMKQIVQSDCVQC-AFRTKI 78
           HFLKL    +Y+TTE  + IL +  +K  +   C+QC  F +K+
Sbjct: 201 HFLKLLGDDSYITTEDMKFILNYLDLKHGLLIRCLQCPLFNSKL 244


>Z81481-2|CAB03948.1|  593|Caenorhabditis elegans Hypothetical
           protein C38D9.2 protein.
          Length = 593

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 15/55 (27%), Positives = 32/55 (58%), Gaps = 3/55 (5%)
 Frame = +2

Query: 278 VEPPNENQTIVGERKKFLV-TTLSTSD--EKVPSSSVAESNVHTVHFGTRGVESQ 433
           +EP ++++ + G++  F+V TT S++D   K+P     ++  HT++   R   +Q
Sbjct: 70  IEPVDKDRRLKGQQLPFIVRTTYSSTDFESKMPKKQREKAGNHTINMDPRAEPTQ 124


>AF016447-3|AAG24018.1|  349|Caenorhabditis elegans Hypothetical
           protein C54F6.8 protein.
          Length = 349

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -3

Query: 403 DCMYITFCYTTGRNLFIRCG*CRNKKLL 320
           DC  I  CY T +    +C  CR K+ L
Sbjct: 53  DCKKINNCYETSKGTRFKCRSCRFKRCL 80


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,737,186
Number of Sequences: 27780
Number of extensions: 269703
Number of successful extensions: 669
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 635
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 669
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1123720628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)