Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8n12
         (658 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC977.14c |||aldo/keto reductase, unknown biological role|Schi...    27   1.8  
SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G family|Schizosaccha...    26   4.2  
SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomy...    25   9.6  
SPBC9B6.10 |cdc37||Hsp90 co-chaperone Cdc37|Schizosaccharomyces ...    25   9.6  
SPCC1020.12c ||SPCC14G10.06|xap-5-like protein|Schizosaccharomyc...    25   9.6  

>SPAC977.14c |||aldo/keto reductase, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 351

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +3

Query: 489 VFGPVVMRMFHFLDAPKEALQC 554
           +FG +  R  HFLD+P+ A QC
Sbjct: 107 IFGDLSSRGVHFLDSPELANQC 128


>SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 496

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 18/68 (26%), Positives = 37/68 (54%), Gaps = 7/68 (10%)
 Frame = +3

Query: 288 NVKEQFV---NFSEKFKTK---MNDFVSDSKNMIFTEDL-KNMVHLAEPSDLQLVLNMIK 446
           NV+E+++   ++ +KF T      D  S+++   F  ++ K  +HL++ + L L   +++
Sbjct: 406 NVEEKYIIPTDYIKKFLTAKKLFTDLPSNNELFSFIHNIPKEFLHLSDSTYLDLEKQVLR 465

Query: 447 KFNTQSTE 470
            FN Q  E
Sbjct: 466 IFNVQIEE 473


>SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 523

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 19/82 (23%), Positives = 38/82 (46%), Gaps = 3/82 (3%)
 Frame = +3

Query: 273 LQARKNVKEQFVNFSEKFKTKMNDFVSDSKNMIFTEDLKNMVHLAEP---SDLQLVLNMI 443
           LQ  +N K+ F  +     +K  D    S ++    D +  + L E     DL++V +++
Sbjct: 15  LQGGENSKKLFSKYD--LWSKAMDEKKLSSSLFTVNDTQEFLELCEACRRGDLEVVKSLV 72

Query: 444 KKFNTQSTEFRFGSFVFGPVVM 509
           + +NT   +     F + P+V+
Sbjct: 73  ENYNTPINQ--VDQFDYSPLVL 92


>SPBC9B6.10 |cdc37||Hsp90 co-chaperone Cdc37|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 466

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = +3

Query: 264 DGYLQARKNVKEQFVNFSEKFKTKMNDFVSDSKNMIFTEDL 386
           D  L+  K+ KE+ +   E  + + +   ++SKN I +EDL
Sbjct: 134 DKCLRRLKSHKERLLKLLEDAQKEYDTLEAESKNYITSEDL 174


>SPCC1020.12c ||SPCC14G10.06|xap-5-like protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 288

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
 Frame = +2

Query: 65  VTENH*LYVFLL--IQNQIKLIHNIEHVSVSKLFFEDFFQL*STIVFTLQAITFYTSEAA 238
           +  +H LY F +  +Q +  L+ + + +S S        QL S  +  L   ++Y     
Sbjct: 195 IPHHHELYYFYINKVQGRDGLLFDFDKLSCSSPEMVATTQLPSQCIPHLVQKSYYLQNRH 254

Query: 239 VCPCNNW 259
           V PC +W
Sbjct: 255 VFPCVHW 261


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,846,729
Number of Sequences: 5004
Number of extensions: 59915
Number of successful extensions: 149
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)