Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8n12
         (658 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0173 + 15414628-15414890,15415001-15415074,15416322-154164...    31   0.81 
11_04_0004 + 12013207-12013280,12013311-12013756,12013865-12014715     30   1.9  
04_01_0328 - 4330904-4333129                                           29   4.3  
03_06_0033 - 31186076-31186189,31186274-31186396,31186524-311867...    28   7.5  
05_03_0427 - 13886814-13887935                                         27   9.9  
01_01_0025 + 188915-189132,190625-190705,191350-191506,191958-19...    27   9.9  

>10_08_0173 +
           15414628-15414890,15415001-15415074,15416322-15416401,
           15417186-15417231,15417334-15417368,15417751-15417771,
           15418418-15419133,15419292-15419324,15419517-15419813,
           15420213-15420659,15420738-15420886,15421408-15421697,
           15421774-15421898,15422006-15422156
          Length = 908

 Score = 31.1 bits (67), Expect = 0.81
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = -1

Query: 634 HGQYSKSSNIWYDTC*SKKPSFAGSSKHCSASLGASKK*NILI 506
           HG  +   N+W+  C S K SFA  + H  +S G SK   I++
Sbjct: 396 HGNLTVEENLWFSACCSLKFSFA--NPHPWSSKGMSKSDKIIV 436


>11_04_0004 + 12013207-12013280,12013311-12013756,12013865-12014715
          Length = 456

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 23/87 (26%), Positives = 38/87 (43%), Gaps = 7/87 (8%)
 Frame = +3

Query: 189 RLFLPCRQLHSTQVRLLYAP-ATIGIDGY------LQARKNVKEQFVNFSEKFKTKMNDF 347
           R F+P     S   RL       + +D Y      L +R  V E       +F   +ND 
Sbjct: 210 RRFVPEHYTRSLYTRLQQLKQGDLSVDAYYKEMELLMSRTGVTENDEATMARFLNGLNDD 269

Query: 348 VSDSKNMIFTEDLKNMVHLAEPSDLQL 428
           V +   + +  D+++MVH+A+  + QL
Sbjct: 270 VKERVEISYYYDIQSMVHIAQRVEQQL 296


>04_01_0328 - 4330904-4333129
          Length = 741

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = -2

Query: 285 SWPVNTHLFQLLQGHTAASLV*NVIACRVKTIVDY 181
           +W V T ++ LL G TAA+ V  ++   ++T+ DY
Sbjct: 510 TWHVATEIYLLLSGRTAAAAVARLVR-TIRTLSDY 543


>03_06_0033 -
           31186076-31186189,31186274-31186396,31186524-31186718,
           31186805-31186930,31187024-31187186,31187270-31187405,
           31187557-31187916,31188026-31188124,31188222-31188489
          Length = 527

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 8/99 (8%)
 Frame = +3

Query: 333 KMNDFVSDSKNMIFTEDLKNMVHLAEPSDLQLVL---NMIKKFNTQSTEFR-FGSFVFGP 500
           ++  F  DS N+ +TE LK +  L  P DLQL      +++ +N +    R    F  GP
Sbjct: 393 RVKGFPVDS-NVPYTERLKILAGLVNPDDLQLSAAERKLVQTYNQKPVLSRPQHKFFKGP 451

Query: 501 ----VVMRMFHFLDAPKEALQCFEEPANDGFFDQQVSYQ 605
               + + +  F    ++ L+ F E    G  D  ++ Q
Sbjct: 452 NYFEIDLDVHRFSFISRKGLEAFRERLKHGVLDLGLTIQ 490


>05_03_0427 - 13886814-13887935
          Length = 373

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
 Frame = -1

Query: 277 CKYPSIPIVAGAYSSLTCVECNCLQGKNNR*LQLKEVFKK*F--RNRDMFY 131
           C Y S      A  ++ C   N L   ++  +Q K+V+KK +  ++RD+ +
Sbjct: 155 CSYKSSTAKVAAVDNMVCARDNSLADIHDLLVQAKQVYKKYYGAKHRDLVF 205


>01_01_0025 +
           188915-189132,190625-190705,191350-191506,191958-192161,
           192248-192356,192401-192496,192724-193994,194200-194384,
           194619-195055,197034-197077,197830-199036,199253-199479
          Length = 1411

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +1

Query: 58  IFGDRESLTLCISPHSKSN*INTQYRTCLCF 150
           +FGD+  L L    H  S+ + T    CLCF
Sbjct: 148 LFGDQVELLLLFLEHESSHCMKTVSLKCLCF 178


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,494,679
Number of Sequences: 37544
Number of extensions: 316245
Number of successful extensions: 674
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 653
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 674
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)