Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8n08
         (623 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3E7.10 |fma1||methionine aminopeptidase Fma1 |Schizosaccharo...    27   1.7  
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    27   2.9  
SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces pombe...    26   3.8  
SPAC23H4.15 |||ribosome biogenesis protein Tsr1 |Schizosaccharom...    25   6.7  
SPAC29B12.10c |||OPT oligopeptide transporter family|Schizosacch...    25   8.9  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    25   8.9  
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces...    25   8.9  

>SPBC3E7.10 |fma1||methionine aminopeptidase Fma1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 379

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = +1

Query: 340 KAERCQVALCLRDGRLVYFRGSHNHPATYNPSKHESRKFQVD 465
           +A+R Q   CL DG   YF G      ++N  KH  R   V+
Sbjct: 18  EADRLQCPKCLNDGVKSYFCGQECFRNSWNIHKHLHRPPNVE 59


>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1692

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 10/29 (34%), Positives = 20/29 (68%)
 Frame = -3

Query: 270  SVGDQVQTAAS*SDVEPTSLAIQFNLYNR 184
            +VG  +   ++ +D EPT+L++  ++YNR
Sbjct: 1141 NVGTSMAIMSTRNDSEPTTLSVMHDVYNR 1169


>SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 433

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +2

Query: 239 LAAVCTWSPTDIYFTKTEAHILVASRGV 322
           L A  TWS  +IY T+  A   +A+ GV
Sbjct: 69  LGAEVTWSSCNIYSTQDHAAAAIAATGV 96


>SPAC23H4.15 |||ribosome biogenesis protein Tsr1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 783

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +1

Query: 295 SHPRRVTWRCARSY 336
           SHPR + WR +RSY
Sbjct: 240 SHPRGIHWRDSRSY 253


>SPAC29B12.10c |||OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 851

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -3

Query: 456 ELPGFVFGGVVRSWMVMGAAEVY*TTVSQT 367
           ++ G+ F G+ R W+V  AA ++  T+  T
Sbjct: 270 QMLGYGFAGLTRRWIVYPAAMIWPQTLVST 299


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 3/81 (3%)
 Frame = +2

Query: 377 TVV*YTSAAPITIQLRTTP-PNTNPGSSK*ILWRQCKRLA*AMTTDSC*RSADIGTSWTP 553
           T V YTS  P+T    +TP   TN  +S  + +      +  +TT +C  S  I  + TP
Sbjct: 431 TSVPYTST-PVT----STPLATTNCTTSTSVPYTSTPVTSTPLTTTNCTTSTSIPYTSTP 485

Query: 554 VTAT--RGDGCAREIAVPVST 610
           VT+T      C    +VP ++
Sbjct: 486 VTSTPLTTTNCTTSTSVPYTS 506


>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 632

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 14/43 (32%), Positives = 19/43 (44%)
 Frame = +3

Query: 480 ASGSPEQ*RRTVVKDQRILVQAGRLLPQQEEMDVRARLRCPYP 608
           A+G   Q    V +D    +  G LLP  E+ D+    R  YP
Sbjct: 165 ATGGGIQHNNFVSRDPEFSIFVGDLLPTTEDSDLFMTFRSIYP 207


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,610,988
Number of Sequences: 5004
Number of extensions: 52948
Number of successful extensions: 113
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)