Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8n08
         (623 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0576 - 5114636-5115151,5115254-5116183,5116898-5117614,511...    29   4.0  
05_03_0597 + 16014809-16015120,16015234-16015398,16015497-160159...    29   4.0  
01_01_1039 - 8200922-8201553,8201652-8201784                           28   6.9  
12_01_0013 - 99290-99299,99593-99703,100085-100587,100925-100995...    27   9.2  
11_01_0013 - 103484-103493,103787-103897,104279-104781,105119-10...    27   9.2  

>08_01_0576 -
           5114636-5115151,5115254-5116183,5116898-5117614,
           5119630-5119746,5119930-5120295,5121365-5121634
          Length = 971

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 13/30 (43%), Positives = 22/30 (73%), Gaps = 1/30 (3%)
 Frame = -2

Query: 418 LDGYG-SRGSILDDRLSNIRQLDSVQLSGR 332
           +D YG S+G  +D+RL  +++LDS  ++GR
Sbjct: 376 IDAYGNSQGKDVDERLPKMQRLDSNGMAGR 405


>05_03_0597 +
           16014809-16015120,16015234-16015398,16015497-16015957,
           16016057-16016233,16016331-16016679
          Length = 487

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 20/79 (25%), Positives = 41/79 (51%), Gaps = 7/79 (8%)
 Frame = +1

Query: 232 RSARGGLHLVANGHIFYEDG-----GSHPRRVTWRCARSYQKAERCQVALCLRDGRL--V 390
           +S  GG + + +G+ + + G     GS   R  ++C  +    ++ +V   L DGR+  +
Sbjct: 180 KSGGGGNNKLEDGYNWRKYGQKQVKGSENPRSYYKCTYNGCSMKK-KVERSLADGRITQI 238

Query: 391 YFRGSHNHPATYNPSKHES 447
            ++G+HNHP   +  ++ S
Sbjct: 239 VYKGAHNHPKPLSTRRNAS 257


>01_01_1039 - 8200922-8201553,8201652-8201784
          Length = 254

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -1

Query: 254 CRPPRADLM*NQPLWRFSSIYTTGL 180
           C PPR     +QP W   ++Y++G+
Sbjct: 120 CNPPRRHFDMSQPAWEAIAVYSSGI 144


>12_01_0013 -
           99290-99299,99593-99703,100085-100587,100925-100995,
           101413-101491,102336-102956
          Length = 464

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = +1

Query: 376 DGRL--VYFRGSHNHPATYNPSKHESRKFQVDPMASVQAARLSN 501
           DGR+  + + G HNHP  + P K  +    V+ + +   A L N
Sbjct: 343 DGRIAEIVYNGEHNHPKPHPPRK-PTLSTSVETLVATNDAGLEN 385


>11_01_0013 -
           103484-103493,103787-103897,104279-104781,105119-105189,
           105607-105685,106530-107153
          Length = 465

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = +1

Query: 376 DGRL--VYFRGSHNHPATYNPSKHESRKFQVDPMASVQAARLSN 501
           DGR+  + + G HNHP  + P K  +    V+ + +   A L N
Sbjct: 344 DGRIAEIVYNGEHNHPKPHPPRK-PTLSTSVETLVATNDAGLEN 386


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,633,962
Number of Sequences: 37544
Number of extensions: 376417
Number of successful extensions: 984
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 968
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 984
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)