Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8n07
         (635 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.         27   0.099
AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        24   0.92 
AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.       23   1.6  
EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxyla...    21   8.6  

>AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.
          Length = 247

 Score = 27.5 bits (58), Expect = 0.099
 Identities = 16/35 (45%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
 Frame = -2

Query: 208 SRSKR--KTG*SGDNLRGPYLPAGYPRTATPTRRH 110
           SRSKR  KTG      R PY      RT  P R+H
Sbjct: 213 SRSKRQPKTGREDQTRRNPYYRPRTSRTEPPRRKH 247


>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 24.2 bits (50), Expect = 0.92
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -1

Query: 503 ISWQSLGDFFPASSRKQT 450
           + W+  GDF P+   KQT
Sbjct: 284 VVWEGFGDFQPSQVHKQT 301


>AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.
          Length = 256

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -2

Query: 145 GYPRTATPTRRHFN 104
           GYP +  P  RHFN
Sbjct: 23  GYPASVQPLPRHFN 36


>EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxylase
           protein.
          Length = 475

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = -1

Query: 245 SEMRTANVTWSDVKEQAQDRVK 180
           +E    +++W +VKE A + +K
Sbjct: 453 TEKADIDISWKEVKEAADEVLK 474


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 130,201
Number of Sequences: 336
Number of extensions: 2439
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16397237
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)