Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte8n07
(635 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0138 + 23067885-23068245,23068393-23068634 32 0.33
06_01_1169 + 9996068-9996265,9996356-9998589,9998675-9998926,999... 30 1.8
12_01_0151 - 1158834-1159703,1159917-1160092,1160144-1162097,116... 29 4.1
03_02_0147 - 5923117-5923215,5923882-5924069,5924885-5924977,592... 29 4.1
06_03_0310 - 19453047-19453160,19453240-19453338,19453441-194535... 28 5.4
06_01_1155 + 9777611-9777808,9777899-9780132,9780218-9780469,978... 28 7.1
06_01_0678 + 4970964-4971587 28 7.1
03_02_0142 + 5877480-5879663,5879783-5879898,5880749-5882419,588... 28 7.1
02_05_0293 - 27585684-27586034,27586590-27586676 28 7.1
10_08_0523 - 18518158-18518442,18518786-18518899,18518994-185192... 27 9.4
03_05_0701 - 26925252-26925578,26929233-26930513 27 9.4
>04_04_0138 + 23067885-23068245,23068393-23068634
Length = 200
Score = 32.3 bits (70), Expect = 0.33
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
Frame = +3
Query: 207 DITPGHVGSPHLTLYGASPS----VYRATNSKTRYSRSNQHAPARPPPMVVTPTPQRS 368
D+ P P L GA+PS V R+T + T S R PP +TP+P+ S
Sbjct: 111 DLPPAATACPGFDLGGAAPSPPVSVPRSTPNSTAPSTPTPVTVTRAPPQQMTPSPKTS 168
>06_01_1169 +
9996068-9996265,9996356-9998589,9998675-9998926,
9999007-9999117,9999207-9999288,9999563-9999754
Length = 1022
Score = 29.9 bits (64), Expect = 1.8
Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = +3
Query: 300 SRSNQHAPARPPPMVVT-PTPQRSLFRD 380
S + QHAP PPP+ + PTPQ +L +
Sbjct: 619 SPTKQHAPPAPPPVQTSPPTPQSALVEE 646
>12_01_0151 - 1158834-1159703,1159917-1160092,1160144-1162097,
1162360-1162620,1162729-1162916,1164127-1164166
Length = 1162
Score = 28.7 bits (61), Expect = 4.1
Identities = 19/62 (30%), Positives = 32/62 (51%)
Frame = +1
Query: 157 RALASCLHFTLSCACSLTSLQVTLAVLISLSTVRRQVCTGRPIVRLVIRALTSMHRHVLL 336
+ L S H L LT L +L L +L ++ Q CTG + I+ LTS+ +H+++
Sbjct: 1073 QGLTSLRHINLMSCPMLTVLPESLRQLSALRSLYMQSCTGLRSLPSSIQHLTSL-QHLVI 1131
Query: 337 QW 342
+
Sbjct: 1132 SY 1133
>03_02_0147 -
5923117-5923215,5923882-5924069,5924885-5924977,
5925499-5925628,5925720-5925802,5925893-5925976,
5926253-5926316,5926375-5926515,5926801-5926863,
5926968-5927006,5927126-5927185,5927567-5927624,
5927708-5928099
Length = 497
Score = 28.7 bits (61), Expect = 4.1
Identities = 18/48 (37%), Positives = 24/48 (50%)
Frame = -2
Query: 178 GDNLRGPYLPAGYPRTATPTRRHFNLQ*NLKFGTSFYIVEKLSL*VLL 35
G L G ++P G+P + TP F + L+ G S YI LS LL
Sbjct: 140 GGRLLGAFVPEGFPGSVTPDYVPFQMWDTLQ-GLSTYIRAMLSTQALL 186
>06_03_0310 -
19453047-19453160,19453240-19453338,19453441-19453513,
19453598-19453708,19453795-19453956,19454064-19454340,
19454542-19455160,19455256-19455471
Length = 556
Score = 28.3 bits (60), Expect = 5.4
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +3
Query: 315 HAPARPPPMVVTPTPQRS 368
HAPA PPP PTP ++
Sbjct: 169 HAPAPPPPQAPAPTPPQA 186
>06_01_1155 +
9777611-9777808,9777899-9780132,9780218-9780469,
9780550-9780660,9780750-9780831,9781106-9781297
Length = 1022
Score = 27.9 bits (59), Expect = 7.1
Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = +3
Query: 300 SRSNQHAPARPPPMVVT-PTPQRSLFRD 380
S + QHAP PP + + PTPQ SL +
Sbjct: 619 SPTKQHAPPAPPSVQTSPPTPQSSLVEE 646
>06_01_0678 + 4970964-4971587
Length = 207
Score = 27.9 bits (59), Expect = 7.1
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +3
Query: 219 GHVGSPHLTLYGASPSVYRATNSKTRYSRSNQHAPARPPP 338
G + G+ P+V R ++ + Y+ + HA RPPP
Sbjct: 62 GEAAGNGINFPGSPPAVARTSDPQEVYAAAVSHANNRPPP 101
>03_02_0142 +
5877480-5879663,5879783-5879898,5880749-5882419,
5882570-5882618,5882703-5882941,5883073-5883174,
5883634-5883862
Length = 1529
Score = 27.9 bits (59), Expect = 7.1
Identities = 15/48 (31%), Positives = 21/48 (43%)
Frame = +3
Query: 210 ITPGHVGSPHLTLYGASPSVYRATNSKTRYSRSNQHAPARPPPMVVTP 353
+TPGHV S + G P +T+ S ++Q P P TP
Sbjct: 824 LTPGHVWSTRADVDGKQPEHSTKGEDQTQPSAASQSLPPGHPSSQPTP 871
>02_05_0293 - 27585684-27586034,27586590-27586676
Length = 145
Score = 27.9 bits (59), Expect = 7.1
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +3
Query: 228 GSPHLTLYGASPSVYRATNSKTRYSRSNQHAPARPP 335
G P +T + ++R N T+ RS+Q AP PP
Sbjct: 72 GRPGVTEQTTTAGIFRLPNPGTQTRRSHQPAPNLPP 107
>10_08_0523 -
18518158-18518442,18518786-18518899,18518994-18519219,
18519364-18519470,18519809-18519964,18520100-18520210
Length = 332
Score = 27.5 bits (58), Expect = 9.4
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +3
Query: 255 ASPSVYRATNSKTRYSRSNQHAPARPPPMVVTPTPQRS 368
+S + ++A S ++N HAP PP P+P S
Sbjct: 155 SSSATHKAQASSHGAKKANGHAPNAPPSRSAKPSPANS 192
>03_05_0701 - 26925252-26925578,26929233-26930513
Length = 535
Score = 27.5 bits (58), Expect = 9.4
Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Frame = +3
Query: 216 PGHVGSPHLTLYGASPSV-YRATNSKTRYSRSNQHAPARPPPMVVTPTP 359
P SPH ++PS A+N + + Q A P P ++ P P
Sbjct: 54 PSSPPSPHAAAAASAPSAGAAASNQASSHHHQQQQPAAAPQPPLLEPLP 102
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,216,816
Number of Sequences: 37544
Number of extensions: 293879
Number of successful extensions: 1128
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1048
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1118
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -