Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8n07
         (635 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46787-10|CAA86749.1|  154|Caenorhabditis elegans Hypothetical p...    41   9e-04
U42436-3|AAL02471.1|  498|Caenorhabditis elegans Hypothetical pr...    33   0.23 
U42436-2|AAL02470.2|  552|Caenorhabditis elegans Hypothetical pr...    33   0.23 
Z69792-6|CAA93669.2|  398|Caenorhabditis elegans Hypothetical pr...    29   3.7  
Z69790-5|CAA93657.2|  398|Caenorhabditis elegans Hypothetical pr...    29   3.7  
AL032621-5|CAA21492.2|  404|Caenorhabditis elegans Hypothetical ...    27   8.5  

>Z46787-10|CAA86749.1|  154|Caenorhabditis elegans Hypothetical
           protein C16C10.11 protein.
          Length = 154

 Score = 40.7 bits (91), Expect = 9e-04
 Identities = 30/131 (22%), Positives = 47/131 (35%), Gaps = 4/131 (3%)
 Frame = +3

Query: 255 ASPSVYRATNSKTRYSRSNQHAPARPPPM---VVTPTPQRSLFRDXXXXXXXXXXXXXXX 425
           A+ S + A   +   +    H PA P PM   +  P+    L +                
Sbjct: 22  AAQSSFAAPPPRPAAAAPAYHPPAAPTPMGAPMGAPSQGPGLMKQMAATAGGVAIGSAVG 81

Query: 426 XXXXXXITGLFSGRRREE-VTQALPRDYQLGSEPNGPCAYEISQFLQCASSRDNLQECEA 602
                  TG  S    +     A P      S  + PC +E  QF+ CA ++ ++  C  
Sbjct: 82  HAVGGMFTGGGSSHAEQAPAAAAAPAGAPQASGYSQPCEFEWRQFVDCAQNQSDVSLCNG 141

Query: 603 FNXALRECKRR 635
           FN   ++CK R
Sbjct: 142 FNDIFKQCKAR 152


>U42436-3|AAL02471.1|  498|Caenorhabditis elegans Hypothetical
           protein C49H3.6b protein.
          Length = 498

 Score = 32.7 bits (71), Expect = 0.23
 Identities = 16/39 (41%), Positives = 19/39 (48%)
 Frame = +3

Query: 255 ASPSVYRATNSKTRYSRSNQHAPARPPPMVVTPTPQRSL 371
           A P V R  NS T +       P  PPP V TP P+ S+
Sbjct: 358 APPPVARLPNSAT-FPTEKSRLPRAPPPAVTTPVPRMSI 395


>U42436-2|AAL02470.2|  552|Caenorhabditis elegans Hypothetical
           protein C49H3.6a protein.
          Length = 552

 Score = 32.7 bits (71), Expect = 0.23
 Identities = 16/39 (41%), Positives = 19/39 (48%)
 Frame = +3

Query: 255 ASPSVYRATNSKTRYSRSNQHAPARPPPMVVTPTPQRSL 371
           A P V R  NS T +       P  PPP V TP P+ S+
Sbjct: 358 APPPVARLPNSAT-FPTEKSRLPRAPPPAVTTPVPRMSI 395


>Z69792-6|CAA93669.2|  398|Caenorhabditis elegans Hypothetical
           protein F40E10.6 protein.
          Length = 398

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 14/52 (26%), Positives = 24/52 (46%)
 Frame = +1

Query: 187 LSCACSLTSLQVTLAVLISLSTVRRQVCTGRPIVRLVIRALTSMHRHVLLQW 342
           L+C C L   Q T+  L        Q C  +PI+ ++   LT++ ++    W
Sbjct: 125 LTCTCCLAGKQYTIEFLRFCKQATLQFCFIKPIMAVITLMLTAIGKYEDGNW 176


>Z69790-5|CAA93657.2|  398|Caenorhabditis elegans Hypothetical
           protein F40E10.6 protein.
          Length = 398

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 14/52 (26%), Positives = 24/52 (46%)
 Frame = +1

Query: 187 LSCACSLTSLQVTLAVLISLSTVRRQVCTGRPIVRLVIRALTSMHRHVLLQW 342
           L+C C L   Q T+  L        Q C  +PI+ ++   LT++ ++    W
Sbjct: 125 LTCTCCLAGKQYTIEFLRFCKQATLQFCFIKPIMAVITLMLTAIGKYEDGNW 176


>AL032621-5|CAA21492.2|  404|Caenorhabditis elegans Hypothetical
           protein Y45F3A.8 protein.
          Length = 404

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = +3

Query: 513 GSEPNGPCAYEISQFLQCASSRDNLQECEAFNXALRECKR 632
           G +P   C    S   +CA+S  +   CE+F+   + C++
Sbjct: 31  GVKPGNSCHLVPSSGYECANSNSSTSWCESFDGKYKCCEK 70


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,752,707
Number of Sequences: 27780
Number of extensions: 244969
Number of successful extensions: 801
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 763
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 795
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)