Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8n04
         (620 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       25   0.39 
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    25   0.39 
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    25   0.39 
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    25   0.39 
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    25   0.39 
DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc gr...    23   2.1  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    23   2.7  
AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    22   3.6  
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    22   4.8  
AM712904-1|CAN84643.1|   86|Tribolium castaneum hypothetical pro...    21   6.3  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    21   8.3  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    21   8.3  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    21   8.3  

>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 25.4 bits (53), Expect = 0.39
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -3

Query: 156 IVNFKKKKYFWPNSY 112
           + N  K++Y+WPN Y
Sbjct: 148 VYNSMKREYYWPNMY 162


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 25.4 bits (53), Expect = 0.39
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = +2

Query: 350 PAQNEIDIVNARFRNGDPVYKHPMIPGY 433
           P    + I     RNGDP + H  IP Y
Sbjct: 417 PVSISLLIAACGLRNGDPCFFHDTIPPY 444


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 25.4 bits (53), Expect = 0.39
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = +2

Query: 350 PAQNEIDIVNARFRNGDPVYKHPMIPGY 433
           P    + I     RNGDP + H  IP Y
Sbjct: 417 PVSISLLIAACGLRNGDPCFFHDTIPPY 444


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 25.4 bits (53), Expect = 0.39
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = +2

Query: 350 PAQNEIDIVNARFRNGDPVYKHPMIPGY 433
           P    + I     RNGDP + H  IP Y
Sbjct: 417 PVSISLLIAACGLRNGDPCFFHDTIPPY 444


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 25.4 bits (53), Expect = 0.39
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = +2

Query: 350 PAQNEIDIVNARFRNGDPVYKHPMIPGY 433
           P    + I     RNGDP + H  IP Y
Sbjct: 417 PVSISLLIAACGLRNGDPCFFHDTIPPY 444


>DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc
           growth factor 2 protein.
          Length = 439

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 14/55 (25%), Positives = 23/55 (41%), Gaps = 2/55 (3%)
 Frame = +2

Query: 380 ARFRNGDPVYKHPMIPGYEGFSGHVPYGFQRFGESSKKLT--NSALCDFSSNYRR 538
           + FR G   ++   +     +  H+ YG+    E + KLT  N        NYR+
Sbjct: 34  SHFRQGQAKFEITDLEPALQYCTHLIYGYAAIDEETYKLTPLNEQFDVIKDNYRK 88


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = -1

Query: 272 GSCVLSSHTYRRSDTCTRDNDPCT 201
           G C   +  YR+    T  ++PCT
Sbjct: 671 GDCFYENKFYRQEAQWTSSDNPCT 694


>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 10/33 (30%), Positives = 15/33 (45%)
 Frame = -1

Query: 620 YGRXQWDLWIMEDQV*PHLQEPTQCSAFFGNST 522
           Y R  WD +    Q   ++ E +  S +F N T
Sbjct: 543 YLRTAWDKFTNMQQQFAYIDESSNSSNYFANKT 575


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 13/35 (37%), Positives = 15/35 (42%)
 Frame = +2

Query: 239 GDTYGSTTHKILLDPSVQHSERLVLSDRTADDFQI 343
           GD Y S   K LLD    H + LV +   A    I
Sbjct: 441 GDRYQSEREKALLDFKTGHRKVLVATGVAARGLDI 475


>AM712904-1|CAN84643.1|   86|Tribolium castaneum hypothetical
           protein protein.
          Length = 86

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +2

Query: 287 VQHSERLVLSDRTADDFQIY 346
           V+H   L LS++ A DF  Y
Sbjct: 46  VKHFHPLALSNKNAIDFNYY 65


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 7/19 (36%), Positives = 10/19 (52%)
 Frame = +2

Query: 176 IAQPHYIPGYTGHCPEYKY 232
           I   +Y+ GY G  P Y +
Sbjct: 372 INHQNYVQGYQGEHPNYNH 390


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 10/32 (31%), Positives = 14/32 (43%)
 Frame = +2

Query: 338 QIYRPAQNEIDIVNARFRNGDPVYKHPMIPGY 433
           QIY+P  N  ++    + N D    H   P Y
Sbjct: 348 QIYQPVTNLTNLTYPSYYNQDVSCTHYQNPEY 379


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 7/19 (36%), Positives = 10/19 (52%)
 Frame = +2

Query: 176 IAQPHYIPGYTGHCPEYKY 232
           I   +Y+ GY G  P Y +
Sbjct: 320 INHQNYVQGYQGEHPNYNH 338


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,026
Number of Sequences: 336
Number of extensions: 3677
Number of successful extensions: 13
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15875032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)