Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8n04
         (620 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    27   1.7  
SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces po...    27   2.9  
SPCC330.02 |rhp7|SPCC613.14|Rad7 homolog Rhp7|Schizosaccharomyce...    26   5.1  
SPAC6G10.08 |idp1||isocitrate dehydrogenase Idp1|Schizosaccharom...    25   6.7  
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos...    25   6.7  
SPAC23G3.03 |sib2||ornithine N5 monooxygenase |Schizosaccharomyc...    25   6.7  
SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D |Schi...    25   8.8  

>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
 Frame = -1

Query: 446  PKTLRILVSWDACKRDRHYGNVRSRCLSRSVLDGRSGSHRPFYRIA-----PASLNAAR 285
            PK  +IL+  +  +  + YGN  +  LSR   D +SG +    ++A     PAS N A+
Sbjct: 2650 PKA-KILIGKELLRHGQEYGNSITNDLSRLCADVKSGKNESELQVALAPFCPASSNQAK 2707


>SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 507

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 14/32 (43%), Positives = 15/32 (46%)
 Frame = +2

Query: 353 AQNEIDIVNARFRNGDPVYKHPMIPGYEGFSG 448
           +  E  I  A   N D  Y  P IP Y GFSG
Sbjct: 329 SDKEFSIWTATECNNDCGYYLPGIPAYHGFSG 360


>SPCC330.02 |rhp7|SPCC613.14|Rad7 homolog Rhp7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 563

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
 Frame = +3

Query: 297 QRGW-CYPIERPMTSRSTVQHRTR 365
           ++GW CYP  R    RS  + RTR
Sbjct: 144 EKGWLCYPCSRGAEDRSVPELRTR 167


>SPAC6G10.08 |idp1||isocitrate dehydrogenase
           Idp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 418

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +2

Query: 185 PHYIPGYTGHCPEYKYRIGDTYGST 259
           P YIPG+T      ++  GD Y ST
Sbjct: 128 PKYIPGWTNPICIGRHAFGDQYKST 152


>SPAC20G8.05c |cdc15||cell division control protein
           Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 927

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
 Frame = +2

Query: 503 SALCDFSSNYRRRQST---EWAPVNVVKPDPPLSIN 601
           +A+ + SS+ RRRQST   + APV++ K      +N
Sbjct: 591 NAMAELSSSMRRRQSTSVDDEAPVSLSKTSSSTRLN 626


>SPAC23G3.03 |sib2||ornithine N5 monooxygenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 431

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -2

Query: 466 KAVRHMTRKPFVSWYHGMLVNGIAITETCVHDV 368
           K +R   + P  SW+ GML+ G  +  + V D+
Sbjct: 34  KKIRVFEKLPTFSWHEGMLIPGSNMQISFVKDL 66


>SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1107

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = -1

Query: 353 LDGRSGSHRPFYRIAPASLNAARSDREGSCVLSSHTYRRSD 231
           LD      +  Y IA   L  +  D+E SC++ S  + R D
Sbjct: 152 LDDSLDVKKTIYTIAIKYLENSGIDKEASCLVLSRLFSRDD 192


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,806,328
Number of Sequences: 5004
Number of extensions: 62140
Number of successful extensions: 162
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)