Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8n04
         (620 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0177 + 1214226-1214294,1214707-1214794,1216095-1216308,121...    28   6.9  
01_01_0018 + 139150-140415                                             28   6.9  
04_03_0358 - 14856490-14856573,14856829-14856874,14857116-148572...    27   9.1  
03_02_0098 + 5608787-5610812,5610956-5611053                           27   9.1  

>02_01_0177 +
           1214226-1214294,1214707-1214794,1216095-1216308,
           1216413-1216738,1216860-1217013,1217377-1217438,
           1218078-1218133,1219456-1221279,1221775-1222698,
           1222855-1222866
          Length = 1242

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 25/88 (28%), Positives = 37/88 (42%), Gaps = 7/88 (7%)
 Frame = +2

Query: 356 QNEIDIVNARF---RNGDPVYKHPMIPGYEGFSGHVPYGFQ-RFGESSKKLTN---SALC 514
           + EI+I++  F    NG PV  +PM   ++   G    G   + G  SK L     +AL 
Sbjct: 149 EEEINILDENFGAKSNGVPVI-YPMNGHFQNGHGVASNGLDGKAGFVSKSLEGRAVAALN 207

Query: 515 DFSSNYRRRQSTEWAPVNVVKPDPPLSI 598
            F  N +      W    +  PDPP  +
Sbjct: 208 KFGQNAKMTSDPMWMKKALPPPDPPAMV 235


>01_01_0018 + 139150-140415
          Length = 421

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 24/87 (27%), Positives = 36/87 (41%), Gaps = 4/87 (4%)
 Frame = +3

Query: 162 WI*SVSPNRIIFLGTRV---IVPSTSIGSAIRMARQHTRSFSIRACS-IQRGWCYPIERP 329
           W  + S NR I L T +   I  + S    + +   H        CS +    C  +++P
Sbjct: 86  WASAQSHNRCIILDTDIAEAIASTESYDFLVDILHNHREKHKSTPCSTLTTKRCRLVDQP 145

Query: 330 MTSRSTVQHRTR*TS*THVSVMAIPFT 410
            TSR   QH+    + T+    AIP T
Sbjct: 146 STSRPPYQHQLPLFAPTYTP--AIPIT 170


>04_03_0358 -
           14856490-14856573,14856829-14856874,14857116-14857229,
           14857366-14857401,14857822-14857946,14858052-14858117,
           14858295-14858534,14858900-14859001,14859101-14859138,
           14859219-14859321,14859402-14859524,14860666-14860742,
           14860853-14860998,14861077-14861246
          Length = 489

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +2

Query: 401 PVYKHPMIPGYEGFSGHVPYGFQRFGESSKK 493
           P Y HP I   E  +  +P  F++ GE+ K+
Sbjct: 266 PCYHHPEIQELEFKNSSLPSSFRKLGETEKR 296


>03_02_0098 + 5608787-5610812,5610956-5611053
          Length = 707

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -3

Query: 564 TGAHSVLCLLR*FDEKSQRAELVSFFDDSP 475
           +G H  LC ++  D + +RA L +FF + P
Sbjct: 44  SGCHCFLCAIKEPDARLRRASLAAFFRELP 73


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,003,953
Number of Sequences: 37544
Number of extensions: 395895
Number of successful extensions: 977
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 943
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 977
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)