Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8m23
         (394 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC30B4.02c |||R3H and G-patch domain, unknown biological role|...    26   1.8  
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch...    25   5.5  

>SPBC30B4.02c |||R3H and G-patch domain, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 26.2 bits (55), Expect = 1.8
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = -2

Query: 222 LHKCSKILYKLV*MLTGELNIRYNMYSTFKNMYILLKK 109
           L  C K + +LV  L  +LN++   Y +    Y +L K
Sbjct: 548 LPPCRKYVRRLVHALANDLNLKSRSYGSGNKRYTMLSK 585


>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 219

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 11/36 (30%), Positives = 23/36 (63%)
 Frame = -1

Query: 115 KKTLHSCVILSIVN*TKNHFNTVEKKFRPSYSKHAN 8
           +KT+ S +  S+ + T +H N V+KK +  + K+++
Sbjct: 116 EKTIDSKIRNSLYSRTIHHGNRVQKKIKNKHGKNSS 151


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,289,481
Number of Sequences: 5004
Number of extensions: 21308
Number of successful extensions: 38
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 130061696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)