Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8m23
         (394 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1106 + 24017601-24019955                                         27   4.1  
03_05_0325 + 23135816-23135894,23136161-23136333,23136440-231366...    26   9.4  

>07_03_1106 + 24017601-24019955
          Length = 784

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +2

Query: 101 MQSFFKSIYIFLNVEYMLYLMLSSPVNIHTSLYNILLHL 217
           M S +    +   VE +L LM  S +N+  + YN L+H+
Sbjct: 599 MVSIYGKNRMVRKVEKILSLMKESAINLSAATYNSLMHM 637


>03_05_0325 +
           23135816-23135894,23136161-23136333,23136440-23136613,
           23136881-23137004,23137090-23137190,23137337-23137423,
           23137801-23137896,23138209-23138329,23138475-23138603,
           23139458-23139549,23139660-23139771,23140189-23140541,
           23140670-23140899,23141179-23141278,23143357-23143411,
           23143548-23145496,23145587-23145745,23146514-23146685,
           23146758-23147056,23147246-23147521
          Length = 1626

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = -3

Query: 101 FMRYTKYSELNKKSFQ 54
           F RYT YSEL +K FQ
Sbjct: 171 FERYTYYSELTRKVFQ 186


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,580,029
Number of Sequences: 37544
Number of extensions: 91106
Number of successful extensions: 110
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 672845152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)